Variant report

Variant	rs11242656
Chromosome Location	chr5:107307404-107307405
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11242655	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11744308	0.91[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs12514858	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17160784	0.91[JPT][hapmap]
rs17165766	0.91[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs172305	0.81[CHB][hapmap]
rs2416520	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35523405	0.81[ASN][1000 genomes]
rs4144479	0.89[CEU][hapmap];0.86[CHB][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.86[MEX][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4568347	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs885624	0.81[CHB][hapmap];0.85[CHD][hapmap];0.91[JPT][hapmap]
rs9328028	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107287400-107308600	Weak transcription	Left Ventricle	heart
2	chr5:107296200-107321000	Weak transcription	Primary T cells from cord blood	blood
3	chr5:107302200-107310400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr5:107302400-107308400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr5:107302400-107309400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr5:107302400-107313800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr5:107302400-107334600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:107303200-107309200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr5:107304200-107314200	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr5:107305000-107313400	Weak transcription	Gastric	stomach
11	chr5:107305200-107310000	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr5:107305400-107313600	Weak transcription	NHEK	skin
13	chr5:107305800-107307800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr5:107306000-107308800	Weak transcription	Fetal Brain Male	brain
15	chr5:107306400-107307600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr5:107306400-107308600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr5:107307000-107310000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr5:107307000-107310600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links