Variant report

Variant	rs4144479
Chromosome Location	chr5:107320296-107320297
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11242655	0.89[CEU][hapmap];0.86[CHB][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.86[MEX][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11242656	0.89[CEU][hapmap];0.86[CHB][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.86[MEX][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11744308	0.81[CHD][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs12514858	0.88[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17160784	0.86[JPT][hapmap]
rs17165766	0.86[JPT][hapmap]
rs172305	0.86[CHB][hapmap]
rs4568347	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs885624	0.86[JPT][hapmap]
rs9328028	0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107296200-107321000	Weak transcription	Primary T cells from cord blood	blood
2	chr5:107302400-107334600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:107313800-107321000	Weak transcription	Lung	lung
4	chr5:107314400-107320400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr5:107314600-107320800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr5:107316000-107327000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr5:107318800-107321000	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr5:107319000-107321000	Weak transcription	Fetal Heart	heart
9	chr5:107319200-107321000	Weak transcription	Left Ventricle	heart
10	chr5:107319600-107325800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr5:107319800-107354000	Weak transcription	Primary B cells from cord blood	blood
12	chr5:107320000-107321600	Enhancers	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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