Variant report

Variant	rs17160784
Chromosome Location	chr5:107303020-107303021
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11242655	0.91[JPT][hapmap]
rs11242656	0.91[JPT][hapmap]
rs11744308	0.95[JPT][hapmap]
rs12514858	0.90[JPT][hapmap]
rs17160769	1.00[ASW][hapmap];0.87[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.80[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17160839	0.81[GIH][hapmap]
rs17165766	1.00[JPT][hapmap]
rs4144479	0.86[JPT][hapmap]
rs61166609	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs885624	1.00[JPT][hapmap]
rs9328028	0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107287400-107304600	Weak transcription	Aorta	Aorta
2	chr5:107287400-107308600	Weak transcription	Left Ventricle	heart
3	chr5:107295400-107303400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr5:107295800-107305400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr5:107296200-107321000	Weak transcription	Primary T cells from cord blood	blood
6	chr5:107300400-107303200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr5:107301000-107305200	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr5:107302000-107303200	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr5:107302200-107310400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr5:107302400-107303600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr5:107302400-107308400	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr5:107302400-107309400	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr5:107302400-107313800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr5:107302400-107334600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr5:107302600-107304000	Weak transcription	HUVEC	blood vessel
16	chr5:107303000-107305800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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