Variant report

Variant	rs12514858
Chromosome Location	chr5:107299375-107299376
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11242655	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11242656	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11744308	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs17160784	0.90[JPT][hapmap]
rs17165766	0.82[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs2416520	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs35523405	0.81[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs4144479	0.88[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4568347	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs885624	0.81[CHB][hapmap];0.90[JPT][hapmap];0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs9328028	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107287400-107304600	Weak transcription	Aorta	Aorta
2	chr5:107287400-107308600	Weak transcription	Left Ventricle	heart
3	chr5:107291200-107302000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr5:107295400-107303400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr5:107295800-107301800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:107295800-107305400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr5:107296200-107321000	Weak transcription	Primary T cells from cord blood	blood
8	chr5:107298000-107302000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links