Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10793832	0.93[EUR][1000 genomes]
rs10900900	1.00[CEU][hapmap];0.88[MEX][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10900901	0.89[EUR][1000 genomes]
rs11242655	0.81[CHB][hapmap];0.85[CHD][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs11242656	0.81[CHB][hapmap];0.85[CHD][hapmap];0.91[JPT][hapmap]
rs11744308	1.00[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11744774	0.91[EUR][1000 genomes]
rs12513714	0.89[EUR][1000 genomes]
rs12514413	0.80[CEU][hapmap]
rs12514858	0.81[CHB][hapmap];0.90[JPT][hapmap];0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs12521275	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13182107	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs17160769	0.80[JPT][hapmap]
rs17160784	1.00[JPT][hapmap]
rs17165766	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17371964	0.80[CEU][hapmap];0.82[TSI][hapmap]
rs17438698	1.00[CEU][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes]
rs1897803	1.00[CEU][hapmap];0.95[TSI][hapmap];0.98[EUR][1000 genomes]
rs35523405	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4144479	0.86[JPT][hapmap]
rs4307079	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs9328028	0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107287400-107304600	Weak transcription	Aorta	Aorta
2	chr5:107287400-107308600	Weak transcription	Left Ventricle	heart
3	chr5:107291200-107302000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr5:107295400-107303400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr5:107295800-107301800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:107295800-107305400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr5:107296200-107321000	Weak transcription	Primary T cells from cord blood	blood
8	chr5:107298000-107302000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr5:107300200-107301400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr5:107300200-107302400	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr5:107300400-107301000	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr5:107300400-107301000	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr5:107300400-107301200	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr5:107300400-107302400	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr5:107300400-107303200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr5:107300600-107302400	Enhancers	iPS-20b Cell Line	embryonic stem cell

Quick Search: