Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10060986	1.00[JPT][hapmap]
rs10793832	0.91[EUR][1000 genomes]
rs10900900	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs10900901	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11744308	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs11744774	0.94[EUR][1000 genomes]
rs12513714	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12514413	0.81[CEU][hapmap]
rs12521275	0.85[EUR][1000 genomes]
rs13182107	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs17160832	1.00[JPT][hapmap]
rs17160839	0.94[JPT][hapmap]
rs17160916	0.83[JPT][hapmap]
rs17165766	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17371964	0.80[CEU][hapmap]
rs17438698	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs1897803	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs35523405	0.87[EUR][1000 genomes]
rs6596763	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6596764	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6596765	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6871553	1.00[JPT][hapmap]
rs6872933	0.94[JPT][hapmap]
rs6879851	1.00[JPT][hapmap]
rs6880003	1.00[JPT][hapmap]
rs6880705	1.00[JPT][hapmap]
rs885624	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs9285958	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv327830	chr5:107337906-107340794	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107319800-107354000	Weak transcription	Primary B cells from cord blood	blood
2	chr5:107327400-107353400	Weak transcription	Aorta	Aorta
3	chr5:107339000-107341000	Weak transcription	Fetal Brain Male	brain
4	chr5:107339200-107341600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr5:107339200-107352400	Weak transcription	Adipose Nuclei	Adipose
6	chr5:107339200-107357400	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr5:107339200-107361200	Weak transcription	Fetal Heart	heart
8	chr5:107339200-107364200	Weak transcription	Left Ventricle	heart
9	chr5:107339600-107341200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr5:107339600-107350800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr5:107339600-107364200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr5:107339600-107373800	Weak transcription	Primary T cells from cord blood	blood
13	chr5:107339800-107341000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr5:107340400-107341800	Weak transcription	Fetal Intestine Small	intestine

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