Variant report

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10060986	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs10066260	0.87[EUR][1000 genomes]
rs10077214	1.00[EUR][1000 genomes]
rs11242657	0.87[EUR][1000 genomes]
rs11956232	1.00[EUR][1000 genomes]
rs11956871	0.87[EUR][1000 genomes]
rs12163950	0.87[EUR][1000 genomes]
rs12652018	0.87[EUR][1000 genomes]
rs12654628	0.87[EUR][1000 genomes]
rs12654703	0.87[EUR][1000 genomes]
rs12658221	0.87[EUR][1000 genomes]
rs1422148	0.87[EUR][1000 genomes]
rs17160832	0.93[CHB][hapmap];0.83[JPT][hapmap];1.00[EUR][1000 genomes]
rs17160839	0.92[CHB][hapmap];1.00[EUR][1000 genomes]
rs2122159	0.87[EUR][1000 genomes]
rs28658262	1.00[EUR][1000 genomes]
rs2910790	0.87[EUR][1000 genomes]
rs2966801	0.87[EUR][1000 genomes]
rs36062636	1.00[EUR][1000 genomes]
rs4307079	0.83[JPT][hapmap]
rs6860327	0.87[EUR][1000 genomes]
rs6862484	0.87[EUR][1000 genomes]
rs6864666	1.00[EUR][1000 genomes]
rs6868458	1.00[EUR][1000 genomes]
rs6871553	0.93[CHB][hapmap];0.83[JPT][hapmap];1.00[EUR][1000 genomes]
rs6872125	1.00[EUR][1000 genomes]
rs6872933	0.86[CHB][hapmap];0.87[EUR][1000 genomes]
rs6877104	1.00[EUR][1000 genomes]
rs6877897	0.87[EUR][1000 genomes]
rs6879851	0.92[CHB][hapmap];0.81[JPT][hapmap];0.87[EUR][1000 genomes]
rs6880003	0.86[CHB][hapmap];0.81[JPT][hapmap];0.87[EUR][1000 genomes]
rs6880705	0.93[CHB][hapmap];0.83[JPT][hapmap];0.87[EUR][1000 genomes]
rs9285958	0.86[CHB][hapmap];0.83[JPT][hapmap];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1029650	chr5:107370079-107435314	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107388400-107510800	Weak transcription	Primary B cells from cord blood	blood
2	chr5:107396800-107409400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr5:107400200-107414600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:107403800-107429800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr5:107404000-107410200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr5:107406200-107413200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr5:107407000-107408200	Enhancers	Primary neutrophils fromperipheralblood	blood

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