Variant report

Variant	rs6868458
Chromosome Location	chr5:107338062-107338063
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:107332693..107334247-chr5:107337068..107339147,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10055112	0.99[ASN][1000 genomes]
rs10066260	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10077214	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11242657	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11956232	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11956871	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12652018	0.87[EUR][1000 genomes]
rs12654628	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1422148	0.87[EUR][1000 genomes]
rs17160832	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17160839	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17160916	1.00[EUR][1000 genomes]
rs28658262	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs36062636	1.00[EUR][1000 genomes]
rs6860327	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6862484	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6864666	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6871553	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6872125	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6872933	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6877104	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6877897	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6879851	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6880003	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6880705	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9285958	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv327830	chr5:107337906-107340794	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107319800-107354000	Weak transcription	Primary B cells from cord blood	blood
2	chr5:107321200-107338800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr5:107327400-107353400	Weak transcription	Aorta	Aorta
4	chr5:107333800-107338400	Weak transcription	NHDF-Ad	bronchial
5	chr5:107333800-107338800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr5:107333800-107338800	Weak transcription	Fetal Brain Male	brain
7	chr5:107334200-107338600	Weak transcription	HUVEC	blood vessel
8	chr5:107336800-107338600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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