Variant report

Variant	rs36062636
Chromosome Location	chr5:107483936-107483937
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10066260	0.87[EUR][1000 genomes]
rs10077214	1.00[EUR][1000 genomes]
rs10515386	0.87[EUR][1000 genomes]
rs11242657	0.87[EUR][1000 genomes]
rs11956232	1.00[EUR][1000 genomes]
rs11956871	0.87[EUR][1000 genomes]
rs12163950	0.87[EUR][1000 genomes]
rs12652018	0.87[EUR][1000 genomes]
rs12654121	0.87[EUR][1000 genomes]
rs12654628	0.87[EUR][1000 genomes]
rs12654703	0.87[EUR][1000 genomes]
rs12656256	0.87[EUR][1000 genomes]
rs12656817	0.87[EUR][1000 genomes]
rs12658221	0.87[EUR][1000 genomes]
rs12659121	0.87[EUR][1000 genomes]
rs12659135	0.87[EUR][1000 genomes]
rs1422148	0.87[EUR][1000 genomes]
rs17160832	1.00[EUR][1000 genomes]
rs17160839	1.00[EUR][1000 genomes]
rs17160916	1.00[EUR][1000 genomes]
rs17161236	0.87[EUR][1000 genomes]
rs17161254	0.87[EUR][1000 genomes]
rs1965392	0.87[EUR][1000 genomes]
rs2063422	0.87[EUR][1000 genomes]
rs2122159	0.87[EUR][1000 genomes]
rs28658262	1.00[EUR][1000 genomes]
rs2910790	0.87[EUR][1000 genomes]
rs2966787	0.87[EUR][1000 genomes]
rs2966791	0.87[EUR][1000 genomes]
rs2966801	0.87[EUR][1000 genomes]
rs4423983	0.87[EUR][1000 genomes]
rs4463170	0.87[EUR][1000 genomes]
rs4957754	0.87[EUR][1000 genomes]
rs6860327	0.87[EUR][1000 genomes]
rs6862484	0.87[EUR][1000 genomes]
rs6864666	1.00[EUR][1000 genomes]
rs6868458	1.00[EUR][1000 genomes]
rs6871553	1.00[EUR][1000 genomes]
rs6872125	1.00[EUR][1000 genomes]
rs6872933	0.87[EUR][1000 genomes]
rs6877104	1.00[EUR][1000 genomes]
rs6877897	0.87[EUR][1000 genomes]
rs6879851	0.87[EUR][1000 genomes]
rs6880003	0.87[EUR][1000 genomes]
rs6880705	0.87[EUR][1000 genomes]
rs72503488	0.87[EUR][1000 genomes]
rs9285958	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv830441	chr5:107450392-107614557	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv882683	chr5:107476501-107769095	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107388400-107510800	Weak transcription	Primary B cells from cord blood	blood
2	chr5:107474600-107511000	Weak transcription	Primary T cells from cord blood	blood
3	chr5:107475200-107527400	Weak transcription	Liver	Liver
4	chr5:107475800-107510400	Weak transcription	Fetal Intestine Small	intestine
5	chr5:107476000-107535600	Weak transcription	Left Ventricle	heart
6	chr5:107477600-107486000	Weak transcription	Psoas Muscle	Psoas
7	chr5:107478800-107488400	Weak transcription	Fetal Lung	lung
8	chr5:107479400-107486000	Weak transcription	Pancreas	Pancrea
9	chr5:107480000-107484600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr5:107480000-107484600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr5:107480400-107500000	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr5:107480800-107521000	Weak transcription	Primary hematopoietic stem cells	blood
13	chr5:107481000-107496400	Weak transcription	Primary B cells from peripheral blood	blood
14	chr5:107481000-107498400	Weak transcription	Fetal Intestine Large	intestine
15	chr5:107481200-107484800	Weak transcription	Esophagus	oesophagus
16	chr5:107481400-107484800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr5:107481600-107484000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr5:107481600-107504400	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr5:107482000-107484600	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr5:107482000-107510800	Weak transcription	Duodenum Mucosa	Duodenum
21	chr5:107482400-107498400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr5:107482600-107484400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr5:107483000-107484600	Weak transcription	Skeletal Muscle Male	skeletal muscle

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