Variant report

Variant	rs28658262
Chromosome Location	chr5:107339721-107339722
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10055112	0.98[ASN][1000 genomes]
rs10066260	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10077214	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11242657	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11956232	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11956871	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12652018	0.87[EUR][1000 genomes]
rs12654628	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1422148	0.87[EUR][1000 genomes]
rs17160832	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17160839	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17160916	1.00[EUR][1000 genomes]
rs36062636	1.00[EUR][1000 genomes]
rs6860327	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6862484	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6864666	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6868458	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6871553	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6872125	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6872933	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6877104	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6877897	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6879851	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6880003	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6880705	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9285958	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv327830	chr5:107337906-107340794	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107319800-107354000	Weak transcription	Primary B cells from cord blood	blood
2	chr5:107327400-107353400	Weak transcription	Aorta	Aorta
3	chr5:107338600-107339800	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr5:107339000-107339800	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr5:107339000-107341000	Weak transcription	Fetal Brain Male	brain
6	chr5:107339200-107341600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr5:107339200-107352400	Weak transcription	Adipose Nuclei	Adipose
8	chr5:107339200-107357400	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr5:107339200-107361200	Weak transcription	Fetal Heart	heart
10	chr5:107339200-107364200	Weak transcription	Left Ventricle	heart
11	chr5:107339400-107339800	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chr5:107339400-107340000	Enhancers	Dnd41	blood
13	chr5:107339600-107339800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr5:107339600-107341200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr5:107339600-107350800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr5:107339600-107364200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr5:107339600-107373800	Weak transcription	Primary T cells from cord blood	blood

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