Variant report

Variant	rs6880003
Chromosome Location	chr5:107332887-107332888
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:107332693..107334247-chr5:107337068..107339147,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10055112	0.97[ASN][1000 genomes]
rs10060986	1.00[JPT][hapmap];0.87[YRI][hapmap]
rs10066260	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10077214	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11242657	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11956232	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11956871	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12654628	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17160832	0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17160839	0.93[CHB][hapmap];0.88[CHD][hapmap];0.83[GIH][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17160916	0.86[CHB][hapmap];0.81[JPT][hapmap];0.87[EUR][1000 genomes]
rs28658262	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36062636	0.87[EUR][1000 genomes]
rs4307079	1.00[JPT][hapmap]
rs6860327	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6862484	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6864666	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6868458	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6871553	0.93[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6872125	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6872933	0.94[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6877104	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6877897	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6879851	1.00[ASW][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6880705	0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9285958	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107302400-107334600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:107319800-107354000	Weak transcription	Primary B cells from cord blood	blood
3	chr5:107321200-107338800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr5:107327400-107353400	Weak transcription	Aorta	Aorta
5	chr5:107332600-107333000	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr5:107332600-107333800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
7	chr5:107332600-107333800	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr5:107332600-107334000	Enhancers	H9 Cell Line	embryonic stem cell
9	chr5:107332600-107334200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr5:107332800-107333000	Enhancers	HUVEC	blood vessel
11	chr5:107332800-107333400	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr5:107332800-107333800	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr5:107332800-107334000	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr5:107332800-107334000	Enhancers	HUES64 Cell Line	embryonic stem cell

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