Variant report

Variant	rs10900900
Chromosome Location	chr5:107313403-107313404
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1025495	0.85[CHB][hapmap]
rs10793832	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10900901	0.90[EUR][1000 genomes]
rs11744308	1.00[CEU][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11744774	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12513616	0.91[ASN][1000 genomes]
rs12513714	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12514413	0.80[CEU][hapmap];1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs12521275	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12523521	0.86[CHB][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs13164327	0.89[ASN][1000 genomes]
rs13182107	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17165766	1.00[CEU][hapmap];0.81[YRI][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17371964	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];0.83[ASN][1000 genomes]
rs17438698	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1897803	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.83[MEX][hapmap];0.97[TSI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34798470	0.88[ASN][1000 genomes]
rs35523405	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4307079	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs66516440	0.83[ASN][1000 genomes]
rs66673402	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs885624	1.00[CEU][hapmap];0.88[MEX][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107296200-107321000	Weak transcription	Primary T cells from cord blood	blood
2	chr5:107302400-107313800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr5:107302400-107334600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:107304200-107314200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr5:107305400-107313600	Weak transcription	NHEK	skin
6	chr5:107308400-107315400	Weak transcription	Fetal Lung	lung
7	chr5:107309000-107314000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr5:107309000-107318800	Weak transcription	Left Ventricle	heart
9	chr5:107310000-107313600	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr5:107310400-107313600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr5:107311200-107313600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr5:107311200-107314200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr5:107311400-107314600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr5:107312400-107313800	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr5:107312400-107314000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr5:107312400-107315200	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr5:107312800-107314000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr5:107312800-107317400	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr5:107313400-107313800	Enhancers	Fetal Thymus	thymus
20	chr5:107313400-107313800	Enhancers	Gastric	stomach
21	chr5:107313400-107313800	Enhancers	Stomach Mucosa	stomach
22	chr5:107313400-107314000	Enhancers	Fetal Kidney	kidney
23	chr5:107313400-107314000	Enhancers	Thymus	Thymus
24	chr5:107313400-107316200	Enhancers	Dnd41	blood
25	chr5:107313400-107317400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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