Variant report

Variant	rs12523521
Chromosome Location	chr5:107319659-107319660
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10793832	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10900900	0.86[CHB][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11744774	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12513616	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12514413	0.88[CHB][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13164327	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13182107	0.88[CHB][hapmap];0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs17371964	0.86[CHB][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17438698	0.86[CHB][hapmap];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1897803	0.86[CHB][hapmap];0.89[ASN][1000 genomes]
rs34798470	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs66673402	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107296200-107321000	Weak transcription	Primary T cells from cord blood	blood
2	chr5:107302400-107334600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:107313800-107321000	Weak transcription	Lung	lung
4	chr5:107314400-107320400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr5:107314600-107320800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr5:107316000-107327000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr5:107316200-107320000	Weak transcription	Dnd41	blood
8	chr5:107318800-107321000	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr5:107319000-107321000	Weak transcription	Fetal Heart	heart
10	chr5:107319200-107321000	Weak transcription	Left Ventricle	heart
11	chr5:107319600-107325800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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