Variant report

Variant	rs12514413
Chromosome Location	chr5:107323866-107323867
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1025495	0.83[CEU][hapmap];0.86[CHB][hapmap]
rs10793832	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10900900	0.80[CEU][hapmap];1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs11744308	0.80[CEU][hapmap]
rs11744774	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12513616	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12521275	0.80[ASN][1000 genomes]
rs12523521	0.88[CHB][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13164327	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13182107	0.81[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17165766	0.81[CEU][hapmap]
rs17371964	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs17438698	0.80[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1897803	0.80[CEU][hapmap];1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs34798470	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4307079	0.81[CEU][hapmap]
rs66673402	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs885624	0.80[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107302400-107334600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:107316000-107327000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr5:107319600-107325800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr5:107319800-107354000	Weak transcription	Primary B cells from cord blood	blood
5	chr5:107321200-107338800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr5:107321400-107326800	Weak transcription	Fetal Heart	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links