Variant report

Variant	rs17438698
Chromosome Location	chr5:107324595-107324596
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1025495	0.85[CHB][hapmap]
rs10793832	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10900900	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10900901	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11744308	1.00[CEU][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs11744774	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12513616	0.97[ASN][1000 genomes]
rs12513714	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12514413	0.80[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12521275	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12523521	0.86[CHB][hapmap];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs13164327	0.83[ASN][1000 genomes]
rs13182107	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17165766	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs17371964	0.86[ASW][hapmap];0.80[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.81[GIH][hapmap];0.86[MEX][hapmap]
rs1897803	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.97[TSI][hapmap];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34798470	0.83[ASN][1000 genomes]
rs35523405	0.91[EUR][1000 genomes]
rs4307079	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs6596763	0.84[EUR][1000 genomes]
rs6596764	0.84[EUR][1000 genomes]
rs6596765	0.82[EUR][1000 genomes]
rs66673402	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs885624	1.00[CEU][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107302400-107334600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:107316000-107327000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr5:107319600-107325800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr5:107319800-107354000	Weak transcription	Primary B cells from cord blood	blood
5	chr5:107321200-107338800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr5:107321400-107326800	Weak transcription	Fetal Heart	heart

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