Variant report

Variant	rs61166609
Chromosome Location	chr5:107309999-107310000
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17160769	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17160784	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107296200-107321000	Weak transcription	Primary T cells from cord blood	blood
2	chr5:107302200-107310400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr5:107302400-107313800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr5:107302400-107334600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:107304200-107314200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr5:107305000-107313400	Weak transcription	Gastric	stomach
7	chr5:107305200-107310000	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr5:107305400-107313600	Weak transcription	NHEK	skin
9	chr5:107307000-107310000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr5:107307000-107310600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr5:107308400-107315400	Weak transcription	Fetal Lung	lung
12	chr5:107309000-107310000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr5:107309000-107314000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr5:107309000-107318800	Weak transcription	Left Ventricle	heart
15	chr5:107309400-107310200	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr5:107309400-107312400	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr5:107309400-107312800	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr5:107309600-107312400	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr5:107309800-107310400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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