Variant report

Variant	rs28821789
Chromosome Location	chr8:130681940-130681941
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16904130	1.00[AMR][1000 genomes]
rs4075569	1.00[AMR][1000 genomes]
rs58710292	0.87[AMR][1000 genomes]
rs6994564	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7006152	1.00[AMR][1000 genomes]
rs7815171	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891446	chr8:130656205-130710638	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130680400-130683000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
2	chr8:130680600-130682600	ZNF genes & repeats	Dnd41	blood
3	chr8:130681400-130682400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr8:130681400-130682400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
5	chr8:130681600-130682400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
6	chr8:130681600-130684600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr8:130681800-130682200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links