Variant report

Variant	rs16904130
Chromosome Location	chr8:130645181-130645182
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16904112	1.00[MEX][hapmap]
rs16904125	1.00[MEX][hapmap]
rs28821789	1.00[AMR][1000 genomes]
rs4075569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58710292	0.87[AMR][1000 genomes]
rs6994564	1.00[AMR][1000 genomes]
rs7006152	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7815171	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7830537	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv612230	chr8:130624121-130661901	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130636800-130651600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr8:130638200-130647600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr8:130640200-130651600	Weak transcription	Fetal Muscle Leg	muscle
4	chr8:130641200-130645400	Weak transcription	Fetal Brain Male	brain
5	chr8:130641800-130645200	Weak transcription	Brain Angular Gyrus	brain
6	chr8:130642200-130645200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr8:130642200-130645400	Weak transcription	Brain Hippocampus Middle	brain
8	chr8:130643600-130646200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr8:130643800-130646400	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr8:130644800-130645400	Enhancers	Brain Anterior Caudate	brain
11	chr8:130644800-130646000	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr8:130644800-130646000	Enhancers	Brain Substantia Nigra	brain
13	chr8:130645000-130647800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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