Variant report

Variant	rs7830537
Chromosome Location	chr8:130657263-130657264
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10093490	0.81[AFR][1000 genomes]
rs10098018	0.81[LWK][hapmap];0.81[AFR][1000 genomes]
rs16904112	1.00[MEX][hapmap]
rs16904125	1.00[MEX][hapmap]
rs16904130	1.00[MEX][hapmap]
rs28675160	0.81[AFR][1000 genomes]
rs6980681	0.81[AFR][1000 genomes]
rs7833928	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7840046	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7840974	0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv612230	chr8:130624121-130661901	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv891446	chr8:130656205-130710638	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130656000-130657800	Enhancers	Fetal Lung	lung
2	chr8:130656600-130657400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr8:130656600-130657400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links