Variant report

Variant	rs7840974
Chromosome Location	chr8:130652542-130652543
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10093490	0.81[AFR][1000 genomes]
rs10098018	0.81[AFR][1000 genomes]
rs28675160	0.81[AFR][1000 genomes]
rs6980681	0.81[AFR][1000 genomes]
rs7830537	0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7833928	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7840046	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv612230	chr8:130624121-130661901	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130651000-130654400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr8:130651000-130655400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr8:130651400-130654800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr8:130651600-130653000	Enhancers	Fetal Muscle Leg	muscle
5	chr8:130651600-130654600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr8:130652400-130652600	Enhancers	Fetal Lung	lung
7	chr8:130652400-130652800	Enhancers	Placenta Amnion	Placenta Amnion

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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