Variant report

Variant	rs28827617
Chromosome Location	chr16:70361067-70361068
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:70359395..70361761-chr16:70375607..70377646,2	MCF-7	breast:
2	chr16:70358578..70361707-chr16:70363854..70367652,3	MCF-7	breast:
3	chr16:70359039..70361319-chr16:70373919..70375711,2	MCF-7	breast:
4	chr16:70359312..70361385-chr16:70413761..70415564,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs28605415	1.00[AMR][1000 genomes]
rs28689052	1.00[AMR][1000 genomes]
rs28848878	1.00[AMR][1000 genomes]
rs3972068	1.00[AMR][1000 genomes]
rs7189290	1.00[AMR][1000 genomes]
rs7195180	1.00[AMR][1000 genomes]
rs7200890	1.00[AMR][1000 genomes]
rs9931559	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906871	chr16:70302333-70375873	Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv482577	chr16:70329048-70516069	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:70333800-70367800	Weak transcription	Small Intestine	intestine
2	chr16:70334000-70368400	Weak transcription	Fetal Heart	heart
3	chr16:70334200-70379800	Weak transcription	Stomach Mucosa	stomach
4	chr16:70335800-70366400	Weak transcription	Psoas Muscle	Psoas
5	chr16:70335800-70374200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr16:70339000-70366400	Weak transcription	K562	blood
7	chr16:70339200-70367600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr16:70339400-70365000	Weak transcription	A549	lung
9	chr16:70339400-70367400	Weak transcription	HMEC	breast
10	chr16:70345600-70366600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr16:70346200-70367600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr16:70346200-70376000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr16:70346400-70369600	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr16:70347400-70371000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr16:70348200-70367800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr16:70348200-70371000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr16:70348400-70371000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr16:70348800-70361200	Strong transcription	Primary neutrophils fromperipheralblood	blood
19	chr16:70348800-70361800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr16:70348800-70365200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr16:70348800-70370600	Strong transcription	Primary T helper cells fromperipheralblood	blood
22	chr16:70348800-70371000	Strong transcription	Liver	Liver
23	chr16:70349200-70361200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr16:70349200-70362400	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr16:70349400-70362200	Strong transcription	Adipose Nuclei	Adipose
26	chr16:70349400-70362400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
27	chr16:70349400-70369400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr16:70349400-70370600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr16:70349400-70371200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr16:70349400-70372000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr16:70349600-70379800	Weak transcription	Fetal Brain Male	brain
32	chr16:70349800-70367600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr16:70349800-70370400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr16:70349800-70372600	Strong transcription	Fetal Muscle Trunk	muscle
35	chr16:70349800-70373200	Strong transcription	Fetal Stomach	stomach
36	chr16:70349800-70374600	Strong transcription	Fetal Muscle Leg	muscle
37	chr16:70350200-70365800	Weak transcription	NHEK	skin
38	chr16:70350600-70369800	Strong transcription	Fetal Brain Female	brain
39	chr16:70351600-70363200	Weak transcription	Right Ventricle	heart
40	chr16:70351800-70363400	Weak transcription	Esophagus	oesophagus
41	chr16:70351800-70365000	Weak transcription	Fetal Kidney	kidney
42	chr16:70351800-70365800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr16:70351800-70367800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr16:70351800-70367800	Weak transcription	NH-A	brain
45	chr16:70352000-70363200	Weak transcription	Gastric	stomach
46	chr16:70352000-70366000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
47	chr16:70352800-70373000	Strong transcription	Cortex derived primary cultured neurospheres	brain
48	chr16:70353800-70362000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr16:70354400-70363400	Weak transcription	Aorta	Aorta
50	chr16:70355000-70361800	Strong transcription	Fetal Thymus	thymus

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