Variant report

Variant	rs9931559
Chromosome Location	chr16:70502976-70502977
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:70487135..70489570-chr16:70502867..70505697,3	MCF-7	breast:
2	chr16:70495439..70497105-chr16:70502567..70504359,2	K562	blood:
3	chr16:70408425..70412469-chr16:70501223..70503201,4	MCF-7	breast:
4	chr16:70413020..70418181-chr16:70497448..70510572,26	MCF-7	breast:
5	chr16:70495074..70498358-chr16:70501504..70504908,3	MCF-7	breast:
6	chr16:70495605..70497210-chr16:70502567..70505009,2	K562	blood:

Variant related genes	Relation type
ENSG00000260111	Chromatin interaction
ENSG00000157353	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13330203	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs28605415	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28689052	1.00[AMR][1000 genomes]
rs28827617	1.00[AMR][1000 genomes]
rs28848878	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7189290	1.00[AMR][1000 genomes]
rs7195180	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482577	chr16:70329048-70516069	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
2	nsv833272	chr16:70369769-70569723	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
3	esv1815154	chr16:70467819-70515355	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv2830027	chr16:70473934-70558039	Genic enhancers Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
5	nsv906873	chr16:70495911-70509838	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	esv1828600	chr16:70500809-70515355	Strong transcription Enhancers Genic enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:70489200-70506000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr16:70489200-70508800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr16:70489400-70504600	Weak transcription	A549	lung
4	chr16:70489400-70508800	Weak transcription	HMEC	breast
5	chr16:70489400-70509000	Weak transcription	NHEK	skin
6	chr16:70489400-70509400	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr16:70489400-70510600	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr16:70489400-70511800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr16:70489400-70512000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr16:70489400-70513000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr16:70489400-70513400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr16:70489400-70513800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr16:70489400-70513800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr16:70489400-70514200	Weak transcription	Small Intestine	intestine
15	chr16:70489400-70556400	Weak transcription	Stomach Mucosa	stomach
16	chr16:70490200-70504400	Weak transcription	Hela-S3	cervix
17	chr16:70490200-70514400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr16:70490600-70505600	Weak transcription	K562	blood
19	chr16:70495000-70504600	Weak transcription	HepG2	liver
20	chr16:70495000-70519000	Strong transcription	Primary T cells from cord blood	blood
21	chr16:70495200-70510200	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr16:70495200-70510200	Weak transcription	Osteobl	bone
23	chr16:70495400-70506800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr16:70495400-70507000	Weak transcription	Fetal Brain Female	brain
25	chr16:70495400-70508800	Weak transcription	GM12878-XiMat	blood
26	chr16:70495400-70510200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr16:70495400-70510200	Weak transcription	HSMM	muscle
28	chr16:70495400-70510400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr16:70495600-70504400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr16:70495800-70512800	Weak transcription	Right Atrium	heart
31	chr16:70497000-70503400	Strong transcription	Duodenum Smooth Muscle	Duodenum
32	chr16:70497000-70507800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr16:70497000-70510200	Strong transcription	Duodenum Mucosa	Duodenum
34	chr16:70497200-70503200	Strong transcription	Pancreas	Pancrea
35	chr16:70497200-70503600	Strong transcription	Sigmoid Colon	Sigmoid Colon
36	chr16:70497200-70504400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr16:70497200-70504800	Strong transcription	Stomach Smooth Muscle	stomach
38	chr16:70497200-70510600	Strong transcription	Lung	lung
39	chr16:70497600-70503600	Strong transcription	Esophagus	oesophagus
40	chr16:70497800-70506200	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr16:70498000-70510200	Weak transcription	HSMMtube	muscle
42	chr16:70498000-70510400	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr16:70498200-70503000	Weak transcription	Brain Hippocampus Middle	brain
44	chr16:70498200-70504600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr16:70498200-70506200	Weak transcription	Left Ventricle	heart
46	chr16:70498200-70506600	Weak transcription	Colon Smooth Muscle	Colon
47	chr16:70498200-70507400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr16:70498200-70507400	Weak transcription	Fetal Thymus	thymus
49	chr16:70498200-70508200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr16:70498200-70509200	Weak transcription	NHLF	lung

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