Variant report

Variant	rs28837432
Chromosome Location	chr14:55662611-55662612
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10134983	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10144326	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11845284	0.91[ASN][1000 genomes]
rs11845848	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13379158	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2094103	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2274271	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6650508	0.87[ASN][1000 genomes]
rs8009244	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs8009718	0.82[ASN][1000 genomes]
rs8013528	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035158	chr14:55638386-55684228	Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55659000-55663200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr14:55659200-55668000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr14:55662200-55667200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr14:55662400-55667400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr14:55662400-55667800	Weak transcription	HepG2	liver
6	chr14:55662600-55662800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr14:55662600-55671000	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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