Variant report

Variant	rs28838709
Chromosome Location	chr15:100165523-100165524
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12101528	0.89[AFR][1000 genomes]
rs13329194	0.98[AFR][1000 genomes]
rs28497795	0.87[AFR][1000 genomes]
rs28520235	0.89[AFR][1000 genomes]
rs28834979	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8039892	0.86[AFR][1000 genomes]
rs8042600	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904546	chr15:99696046-100166300	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv1036346	chr15:99752391-100365458	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv542520	chr15:99752391-100365458	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv817201	chr15:99839238-100537341	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	nsv904558	chr15:100019382-100171684	ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:100142800-100176400	Weak transcription	Fetal Stomach	stomach
2	chr15:100144000-100180800	Weak transcription	Thymus	Thymus
3	chr15:100155200-100191000	Weak transcription	HSMMtube	muscle
4	chr15:100155400-100168400	Weak transcription	Stomach Mucosa	stomach
5	chr15:100155400-100170800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr15:100155400-100180800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr15:100156000-100170800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr15:100156000-100173200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr15:100158000-100166000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr15:100158000-100171000	Weak transcription	Brain Anterior Caudate	brain
11	chr15:100158600-100165600	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr15:100159000-100253000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr15:100159200-100166000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr15:100159400-100166400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr15:100159400-100174600	Weak transcription	Brain Angular Gyrus	brain
16	chr15:100159600-100166200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr15:100159600-100167200	Weak transcription	Left Ventricle	heart
18	chr15:100159600-100167200	Weak transcription	Pancreas	Pancrea
19	chr15:100159600-100169400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr15:100159600-100170800	Weak transcription	Right Ventricle	heart
21	chr15:100159600-100174400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr15:100159600-100180600	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr15:100159600-100181200	Weak transcription	Lung	lung
24	chr15:100159600-100200400	Weak transcription	Aorta	Aorta
25	chr15:100159800-100180800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr15:100160000-100167800	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr15:100160000-100170400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr15:100160200-100168600	Weak transcription	Brain Hippocampus Middle	brain
29	chr15:100160200-100171000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr15:100160600-100171200	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr15:100160800-100165600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr15:100160800-100167200	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr15:100160800-100167800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr15:100160800-100168200	Weak transcription	Colon Smooth Muscle	Colon
35	chr15:100160800-100170800	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr15:100160800-100171400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr15:100160800-100172600	Weak transcription	Fetal Lung	lung
38	chr15:100160800-100215200	Weak transcription	Ovary	ovary
39	chr15:100161000-100167800	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr15:100161000-100168800	Weak transcription	Adipose Nuclei	Adipose
41	chr15:100161400-100166200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr15:100161400-100167200	Weak transcription	Psoas Muscle	Psoas
43	chr15:100161400-100169000	Weak transcription	Primary monocytes fromperipheralblood	blood
44	chr15:100161400-100170800	Weak transcription	Gastric	stomach
45	chr15:100162000-100170800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr15:100162600-100166600	Weak transcription	Fetal Heart	heart
47	chr15:100162800-100166000	Weak transcription	Liver	Liver
48	chr15:100163200-100166200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
49	chr15:100163200-100166600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr15:100163600-100165600	Strong transcription	Primary B cells from cord blood	blood

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