Variant report

Variant	rs12101528
Chromosome Location	chr15:100188555-100188556
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:100182669..100185169-chr15:100186996..100189324,2	MCF-7	breast:
2	chr15:100186743..100189963-chr15:100192654..100195752,3	MCF-7	breast:
3	chr15:100105870..100108860-chr15:100186464..100188597,2	K562	blood:

Variant related genes	Relation type
ENSG00000068305	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13329194	1.00[CEU][hapmap];0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs182730	1.00[CEU][hapmap]
rs2570803	1.00[CEU][hapmap]
rs2570824	1.00[CEU][hapmap]
rs2570931	1.00[CEU][hapmap]
rs2570932	1.00[CEU][hapmap]
rs2570933	1.00[CEU][hapmap]
rs28497795	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28520235	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28834979	0.85[AFR][1000 genomes]
rs28838709	0.89[AFR][1000 genomes]
rs8029516	1.00[CEU][hapmap]
rs8032302	1.00[CEU][hapmap]
rs8039892	1.00[CEU][hapmap];0.86[AFR][1000 genomes]
rs8042600	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036346	chr15:99752391-100365458	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv542520	chr15:99752391-100365458	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv817201	chr15:99839238-100537341	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv1038005	chr15:100170414-100633714	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	nsv542522	chr15:100170414-100633714	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
6	nsv904559	chr15:100174907-100255046	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:100155200-100191000	Weak transcription	HSMMtube	muscle
2	chr15:100159000-100253000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:100159600-100200400	Weak transcription	Aorta	Aorta
4	chr15:100160800-100215200	Weak transcription	Ovary	ovary
5	chr15:100167600-100191600	Weak transcription	Pancreas	Pancrea
6	chr15:100168200-100214600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr15:100171200-100191000	Weak transcription	Osteobl	bone
8	chr15:100171200-100191800	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr15:100171200-100192200	Weak transcription	Placenta	Placenta
10	chr15:100171200-100232800	Weak transcription	Esophagus	oesophagus
11	chr15:100171200-100248800	Weak transcription	Gastric	stomach
12	chr15:100171800-100190200	Weak transcription	Brain Hippocampus Middle	brain
13	chr15:100171800-100190400	Weak transcription	HMEC	breast
14	chr15:100172000-100230800	Weak transcription	Stomach Mucosa	stomach
15	chr15:100172400-100191400	Weak transcription	HUVEC	blood vessel
16	chr15:100172600-100191200	Weak transcription	NH-A	brain
17	chr15:100172800-100197800	Weak transcription	Small Intestine	intestine
18	chr15:100173200-100189200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr15:100173200-100190200	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr15:100175000-100192400	Weak transcription	Brain Cingulate Gyrus	brain
21	chr15:100175000-100199400	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr15:100175000-100208800	Weak transcription	Brain Substantia Nigra	brain
23	chr15:100175000-100208800	Weak transcription	Rectal Smooth Muscle	rectum
24	chr15:100175000-100211600	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr15:100176800-100190000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr15:100176800-100208800	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr15:100176800-100215200	Weak transcription	Brain Germinal Matrix	brain
28	chr15:100177400-100191800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr15:100177800-100191400	Weak transcription	Hela-S3	cervix
30	chr15:100179200-100232600	Weak transcription	Colonic Mucosa	Colon
31	chr15:100181200-100190600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr15:100181600-100191400	Weak transcription	Lung	lung
33	chr15:100181600-100191600	Weak transcription	Left Ventricle	heart
34	chr15:100181600-100211600	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr15:100181600-100215200	Weak transcription	Spleen	Spleen
36	chr15:100181600-100215600	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr15:100181800-100191000	Weak transcription	Stomach Smooth Muscle	stomach
38	chr15:100181800-100191600	Weak transcription	Fetal Intestine Small	intestine
39	chr15:100181800-100192400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr15:100181800-100214600	Weak transcription	Thymus	Thymus
41	chr15:100181800-100232800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr15:100182000-100190200	Weak transcription	Fetal Muscle Leg	muscle
43	chr15:100182000-100191000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr15:100182000-100191600	Weak transcription	Fetal Stomach	stomach
45	chr15:100182000-100211400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr15:100182200-100191000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr15:100182200-100199000	Weak transcription	Fetal Muscle Trunk	muscle
48	chr15:100182200-100211600	Weak transcription	Duodenum Mucosa	Duodenum
49	chr15:100183000-100191400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr15:100185000-100188600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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