Variant report

Variant	rs182730
Chromosome Location	chr15:100231430-100231431
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:100231169..100233211-chr15:100238091..100241014,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12101528	1.00[CEU][hapmap]
rs13329194	1.00[CEU][hapmap]
rs2570803	1.00[CEU][hapmap]
rs2570824	1.00[CEU][hapmap]
rs2570931	1.00[CEU][hapmap]
rs2570932	1.00[CEU][hapmap]
rs2570933	1.00[CEU][hapmap]
rs325385	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8029516	1.00[CEU][hapmap]
rs8032302	1.00[CEU][hapmap]
rs8039892	1.00[CEU][hapmap]
rs8042600	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036346	chr15:99752391-100365458	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv542520	chr15:99752391-100365458	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv817201	chr15:99839238-100537341	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv1038005	chr15:100170414-100633714	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	nsv542522	chr15:100170414-100633714	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
6	nsv904559	chr15:100174907-100255046	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	nsv904560	chr15:100196657-100339331	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
8	nsv904561	chr15:100204918-100486828	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
9	nsv904562	chr15:100214935-100237682	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:100159000-100253000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:100171200-100232800	Weak transcription	Esophagus	oesophagus
3	chr15:100171200-100248800	Weak transcription	Gastric	stomach
4	chr15:100179200-100232600	Weak transcription	Colonic Mucosa	Colon
5	chr15:100181800-100232800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr15:100199800-100232600	Weak transcription	Right Ventricle	heart
7	chr15:100209800-100232800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr15:100211800-100232200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr15:100212800-100240000	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr15:100213000-100232600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr15:100213200-100250800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr15:100213400-100232600	Weak transcription	Pancreas	Pancrea
13	chr15:100213600-100243400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr15:100216200-100232600	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr15:100216200-100233000	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr15:100216800-100232200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr15:100217000-100232800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr15:100217400-100232600	Weak transcription	Fetal Intestine Small	intestine
19	chr15:100218200-100232600	Weak transcription	Hela-S3	cervix
20	chr15:100218200-100232800	Weak transcription	Rectal Smooth Muscle	rectum
21	chr15:100219400-100248200	Weak transcription	Small Intestine	intestine
22	chr15:100219600-100248400	Weak transcription	Spleen	Spleen
23	chr15:100219800-100243600	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr15:100220400-100232600	Weak transcription	Thymus	Thymus
25	chr15:100220400-100233000	Weak transcription	Right Atrium	heart
26	chr15:100221800-100232000	Weak transcription	Psoas Muscle	Psoas
27	chr15:100222000-100232600	Weak transcription	Aorta	Aorta
28	chr15:100222800-100243600	Weak transcription	Brain Angular Gyrus	brain
29	chr15:100223600-100232600	Weak transcription	NHEK	skin
30	chr15:100223600-100232800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr15:100223600-100236600	Strong transcription	Fetal Lung	lung
32	chr15:100223600-100247400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr15:100223800-100232800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr15:100223800-100241000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr15:100223800-100243600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr15:100223800-100246800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr15:100224000-100246600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr15:100224200-100232600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr15:100224600-100232400	Weak transcription	HUVEC	blood vessel
40	chr15:100226400-100236000	Strong transcription	Fetal Thymus	thymus
41	chr15:100226800-100232000	Weak transcription	Brain Substantia Nigra	brain
42	chr15:100226800-100232400	Weak transcription	Brain Cingulate Gyrus	brain
43	chr15:100226800-100232400	Weak transcription	Fetal Brain Male	brain
44	chr15:100226800-100232600	Weak transcription	A549	lung
45	chr15:100226800-100232800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr15:100226800-100240000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr15:100227000-100232600	Weak transcription	Brain Anterior Caudate	brain
48	chr15:100227000-100237200	Strong transcription	Primary B cells from cord blood	blood
49	chr15:100227000-100237600	Strong transcription	Primary B cells from peripheral blood	blood
50	chr15:100227200-100232400	Weak transcription	Brain Hippocampus Middle	brain

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