Variant report

Variant	rs2570933
Chromosome Location	chr15:100159243-100159244
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1036320	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1108205	1.00[EUR][1000 genomes]
rs11247122	1.00[EUR][1000 genomes]
rs12101528	1.00[CEU][hapmap]
rs13329194	1.00[CEU][hapmap]
rs182730	1.00[CEU][hapmap]
rs2570800	1.00[EUR][1000 genomes]
rs2570802	1.00[EUR][1000 genomes]
rs2570803	1.00[CEU][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2570809	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2570814	1.00[EUR][1000 genomes]
rs2570820	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2570824	1.00[CEU][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2570924	1.00[EUR][1000 genomes]
rs2570925	1.00[EUR][1000 genomes]
rs2570926	1.00[EUR][1000 genomes]
rs2570928	0.80[AFR][1000 genomes]
rs2570931	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2570932	1.00[CEU][hapmap];0.86[YRI][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2570935	1.00[EUR][1000 genomes]
rs2570938	1.00[EUR][1000 genomes]
rs2581463	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2581473	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs28661496	1.00[EUR][1000 genomes]
rs28747079	1.00[EUR][1000 genomes]
rs28816423	1.00[EUR][1000 genomes]
rs325385	1.00[EUR][1000 genomes]
rs325388	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs325399	1.00[EUR][1000 genomes]
rs325401	1.00[EUR][1000 genomes]
rs325407	1.00[EUR][1000 genomes]
rs7163764	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7170276	1.00[EUR][1000 genomes]
rs7182926	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs748568	1.00[CEU][hapmap]
rs8027544	1.00[EUR][1000 genomes]
rs8029516	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs8032302	1.00[CEU][hapmap]
rs8039892	1.00[CEU][hapmap]
rs8040915	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs8042600	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904546	chr15:99696046-100166300	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv1036346	chr15:99752391-100365458	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv542520	chr15:99752391-100365458	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv817201	chr15:99839238-100537341	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	nsv904558	chr15:100019382-100171684	ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:100142800-100159400	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr15:100142800-100164000	Weak transcription	Fetal Thymus	thymus
3	chr15:100142800-100176400	Weak transcription	Fetal Stomach	stomach
4	chr15:100143000-100163200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:100144000-100180800	Weak transcription	Thymus	Thymus
6	chr15:100153200-100160400	Enhancers	Liver	Liver
7	chr15:100153400-100159400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr15:100154000-100159600	Weak transcription	Stomach Smooth Muscle	stomach
9	chr15:100155000-100159400	Weak transcription	Hela-S3	cervix
10	chr15:100155200-100160600	Enhancers	Fetal Heart	heart
11	chr15:100155200-100163600	Weak transcription	Dnd41	blood
12	chr15:100155200-100191000	Weak transcription	HSMMtube	muscle
13	chr15:100155400-100159400	Weak transcription	Small Intestine	intestine
14	chr15:100155400-100164200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr15:100155400-100168400	Weak transcription	Stomach Mucosa	stomach
16	chr15:100155400-100170800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr15:100155400-100180800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr15:100155600-100164200	Weak transcription	Primary hematopoietic stem cells	blood
19	chr15:100156000-100164200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr15:100156000-100170800	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr15:100156000-100173200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr15:100156200-100163200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr15:100156600-100159600	Enhancers	Brain Cingulate Gyrus	brain
24	chr15:100157000-100160000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
25	chr15:100157000-100160200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr15:100157800-100160400	Enhancers	Adipose Nuclei	Adipose
27	chr15:100158000-100160400	Weak transcription	GM12878-XiMat	blood
28	chr15:100158000-100166000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr15:100158000-100171000	Weak transcription	Brain Anterior Caudate	brain
30	chr15:100158200-100164800	Weak transcription	Primary B cells from peripheral blood	blood
31	chr15:100158400-100160200	Enhancers	Osteobl	bone
32	chr15:100158400-100163600	Weak transcription	Primary T cells from cord blood	blood
33	chr15:100158600-100165600	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr15:100158800-100159600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr15:100158800-100159800	Enhancers	HUES64 Cell Line	embryonic stem cell
36	chr15:100158800-100160800	Enhancers	HUES48 Cell Line	embryonic stem cell
37	chr15:100158800-100160800	Enhancers	Rectal Smooth Muscle	rectum
38	chr15:100159000-100159400	Enhancers	Brain Angular Gyrus	brain
39	chr15:100159000-100159400	Enhancers	Brain Inferior Temporal Lobe	brain
40	chr15:100159000-100159600	Enhancers	iPS-20b Cell Line	embryonic stem cell
41	chr15:100159000-100159600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
42	chr15:100159000-100159800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
43	chr15:100159000-100159800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr15:100159000-100159800	Genic enhancers	Primary B cells from cord blood	blood
45	chr15:100159000-100160000	Enhancers	iPS-18 Cell Line	embryonic stem cell
46	chr15:100159000-100160200	Enhancers	Placenta Amnion	Placenta Amnion
47	chr15:100159000-100160600	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr15:100159000-100161400	Enhancers	Primary monocytes fromperipheralblood	blood
49	chr15:100159000-100162600	Enhancers	HepG2	liver
50	chr15:100159000-100253000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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