Variant report

Variant	rs748568
Chromosome Location	chr15:99966405-99966406
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:99966102..99966691-chr15:100044817..100045390,2	MCF-7	breast:
2	chr15:99964977..99967345-chr15:100103742..100106400,3	MCF-7	breast:
3	chr15:99965843..99966811-chr15:100243795..100245106,3	MCF-7	breast:
4	chr15:99966023..99966782-chr15:100243828..100244741,2	MCF-7	breast:
5	chr15:99965407..99967484-chr15:99969675..99971240,2	K562	blood:
6	chr15:99960211..99963086-chr15:99964919..99968237,3	MCF-7	breast:
7	chr15:99966031..99966539-chr15:100044729..100045649,2	MCF-7	breast:
8	chr15:99966071..99969014-chr15:100104345..100107384,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000259341	Chromatin interaction
ENSG00000068305	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10152409	1.00[EUR][1000 genomes]
rs1867090	1.00[EUR][1000 genomes]
rs2570803	1.00[CEU][hapmap]
rs2570824	1.00[CEU][hapmap]
rs2570931	1.00[CEU][hapmap]
rs2570932	1.00[CEU][hapmap]
rs2570933	1.00[CEU][hapmap]
rs28448455	1.00[EUR][1000 genomes]
rs4965232	1.00[CEU][hapmap]
rs4965496	1.00[EUR][1000 genomes]
rs58486555	1.00[EUR][1000 genomes]
rs59502554	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59563158	1.00[EUR][1000 genomes]
rs59993988	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7175111	1.00[CEU][hapmap]
rs73474858	1.00[EUR][1000 genomes]
rs74033718	1.00[EUR][1000 genomes]
rs74033725	1.00[EUR][1000 genomes]
rs74035728	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74035771	1.00[EUR][1000 genomes]
rs8032302	1.00[CEU][hapmap]
rs8032423	1.00[EUR][1000 genomes]
rs8039892	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055008	chr15:99477144-100019861	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv904543	chr15:99513231-99991506	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv533926	chr15:99519820-99997114	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
4	nsv915926	chr15:99519820-100138705	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
5	nsv817289	chr15:99621061-100138705	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
6	nsv431411	chr15:99621061-100143999	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
7	nsv904546	chr15:99696046-100166300	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
8	nsv1036346	chr15:99752391-100365458	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
9	nsv542520	chr15:99752391-100365458	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
10	nsv1051560	chr15:99837102-100124483	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
11	nsv817201	chr15:99839238-100537341	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
12	nsv904547	chr15:99940221-99979159	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv904548	chr15:99940221-99979418	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
14	nsv904549	chr15:99940221-99991506	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
15	nsv519800	chr15:99950772-99987109	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
16	nsv904550	chr15:99954278-99978524	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
17	nsv904551	chr15:99954278-99979418	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
18	nsv904552	chr15:99954278-99982447	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
19	nsv904553	chr15:99954278-99983175	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
20	nsv904554	chr15:99956954-99979418	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
21	nsv904555	chr15:99956954-99981269	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
22	nsv904556	chr15:99956954-99987109	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
23	nsv904557	chr15:99956954-99991506	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:99944800-99972400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr15:99957200-99973200	Weak transcription	Gastric	stomach
3	chr15:99961000-99966800	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr15:99961600-99966800	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr15:99962800-99966600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr15:99963200-99966800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr15:99963400-99967400	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr15:99963600-99966800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr15:99963600-99966800	Enhancers	Fetal Thymus	thymus
10	chr15:99963600-99967200	Enhancers	Left Ventricle	heart
11	chr15:99964000-99967600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr15:99964200-99966600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
13	chr15:99964200-99966600	Enhancers	Brain Hippocampus Middle	brain
14	chr15:99964200-99967200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr15:99964200-99967200	Enhancers	Lung	lung
16	chr15:99964400-99966800	Enhancers	Right Ventricle	heart
17	chr15:99964400-99967200	Enhancers	Sigmoid Colon	Sigmoid Colon
18	chr15:99964600-99966600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr15:99964600-99966600	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr15:99964600-99966600	Enhancers	Primary hematopoietic stem cells	blood
21	chr15:99964600-99966800	Enhancers	Primary T killer memory cells from peripheral blood	blood
22	chr15:99964600-99967000	Enhancers	Placenta Amnion	Placenta Amnion
23	chr15:99964600-99967000	Enhancers	HepG2	liver
24	chr15:99964600-99967200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr15:99964800-99966600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr15:99964800-99966600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr15:99964800-99966600	Enhancers	Rectal Smooth Muscle	rectum
28	chr15:99964800-99966600	Enhancers	Dnd41	blood
29	chr15:99964800-99966600	Enhancers	NHEK	skin
30	chr15:99964800-99966800	Enhancers	Primary B cells from peripheral blood	blood
31	chr15:99964800-99966800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr15:99964800-99966800	Enhancers	HUVEC	blood vessel
33	chr15:99964800-99967000	Enhancers	Primary hematopoietic stem cells short term culture	blood
34	chr15:99964800-99967000	Enhancers	Adipose Nuclei	Adipose
35	chr15:99964800-99967000	Enhancers	NH-A	brain
36	chr15:99964800-99967200	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr15:99965000-99966600	Enhancers	Brain Cingulate Gyrus	brain
38	chr15:99965000-99966800	Enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr15:99965000-99966800	Enhancers	Esophagus	oesophagus
40	chr15:99965000-99967200	Enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr15:99965000-99967200	Enhancers	Placenta	Placenta
42	chr15:99965000-99968400	Enhancers	Fetal Heart	heart
43	chr15:99965200-99966600	Enhancers	Right Atrium	heart
44	chr15:99965200-99966800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr15:99965200-99966800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr15:99965200-99966800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
47	chr15:99965200-99966800	Enhancers	Stomach Mucosa	stomach
48	chr15:99965400-99966600	Weak transcription	Colonic Mucosa	Colon
49	chr15:99965400-99966800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
50	chr15:99965400-99967400	Bivalent Enhancer	Fetal Muscle Trunk	muscle

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