Variant report

Variant	rs7175111
Chromosome Location	chr15:99910083-99910084
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:99908481..99910552-chr15:99914998..99917722,2	MCF-7	breast:
2	chr15:99909577..99912382-chr15:99924265..99925910,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168904	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs4965232	1.00[CEU][hapmap]
rs4965452	1.00[CEU][hapmap]
rs4965457	1.00[CEU][hapmap]
rs57822472	1.00[AMR][1000 genomes]
rs748568	1.00[CEU][hapmap]
rs8032302	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039575	chr15:98982045-99924685	Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	nsv1055008	chr15:99477144-100019861	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv904543	chr15:99513231-99991506	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
4	nsv533926	chr15:99519820-99997114	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
5	nsv915926	chr15:99519820-100138705	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
6	nsv949203	chr15:99621061-99932797	Strong transcription Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
7	nsv817289	chr15:99621061-100138705	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
8	nsv431411	chr15:99621061-100143999	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
9	nsv570716	chr15:99629901-99916332	Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
10	nsv904546	chr15:99696046-100166300	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
11	nsv1036346	chr15:99752391-100365458	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
12	nsv542520	chr15:99752391-100365458	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
13	nsv1051560	chr15:99837102-100124483	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
14	nsv817201	chr15:99839238-100537341	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
15	nsv1052683	chr15:99869631-99924685	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
16	nsv542521	chr15:99869631-99924685	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:99867200-99926600	Weak transcription	NHEK	skin
2	chr15:99872000-99912600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr15:99872800-99911400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr15:99882600-99911200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr15:99882600-99925200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr15:99884400-99910400	Weak transcription	Brain Substantia Nigra	brain
7	chr15:99884600-99910800	Weak transcription	Brain Hippocampus Middle	brain
8	chr15:99885400-99911800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr15:99885400-99916000	Weak transcription	Fetal Heart	heart
10	chr15:99886600-99911400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr15:99886600-99931400	Weak transcription	Esophagus	oesophagus
12	chr15:99893600-99925400	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr15:99893800-99911600	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr15:99894000-99925200	Weak transcription	Stomach Smooth Muscle	stomach
15	chr15:99900600-99911400	Weak transcription	Right Ventricle	heart
16	chr15:99901200-99911400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr15:99901400-99910200	Strong transcription	Fetal Intestine Large	intestine
18	chr15:99901600-99910400	Strong transcription	Liver	Liver
19	chr15:99902000-99925600	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr15:99902400-99911400	Weak transcription	Ovary	ovary
21	chr15:99903600-99924800	Weak transcription	Left Ventricle	heart
22	chr15:99903600-99925200	Weak transcription	Lung	lung
23	chr15:99903600-99926600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr15:99903800-99911400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr15:99905000-99928200	Weak transcription	Pancreas	Pancrea
26	chr15:99906000-99910400	ZNF genes & repeats	GM12878-XiMat	blood
27	chr15:99906200-99910200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
28	chr15:99906200-99910400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr15:99906400-99910200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
30	chr15:99906400-99910400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr15:99906400-99916200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr15:99906600-99910400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
33	chr15:99907000-99912000	Weak transcription	Aorta	Aorta
34	chr15:99907000-99912000	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr15:99907000-99925400	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr15:99907200-99911400	Weak transcription	Adipose Nuclei	Adipose
37	chr15:99907200-99926600	Weak transcription	Fetal Kidney	kidney
38	chr15:99907400-99924800	Weak transcription	A549	lung
39	chr15:99907400-99926200	Weak transcription	Fetal Muscle Trunk	muscle
40	chr15:99907400-99928200	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr15:99907800-99910400	ZNF genes & repeats	Primary B cells from cord blood	blood
42	chr15:99907800-99925400	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr15:99908200-99924800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr15:99908200-99925400	Weak transcription	Monocytes-CD14+_RO01746	blood
45	chr15:99908800-99924000	Weak transcription	Fetal Stomach	stomach
46	chr15:99909000-99910200	Enhancers	Primary neutrophils fromperipheralblood	blood
47	chr15:99909000-99911200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr15:99909000-99911400	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr15:99909000-99914400	Weak transcription	Colon Smooth Muscle	Colon
50	chr15:99909200-99912800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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