Variant report

Variant	rs10152409
Chromosome Location	chr15:100051096-100051097
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:100050232..100051777-chr15:100055190..100057215,2	K562	blood:
2	chr15:100041461..100043995-chr15:100049770..100051329,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12101528	1.00[CEU][hapmap]
rs13329194	1.00[CEU][hapmap]
rs182730	1.00[CEU][hapmap]
rs1867090	1.00[EUR][1000 genomes]
rs2570803	1.00[CEU][hapmap]
rs2570824	1.00[CEU][hapmap]
rs2570931	1.00[CEU][hapmap]
rs2570932	1.00[CEU][hapmap]
rs2570933	1.00[CEU][hapmap]
rs28448455	1.00[EUR][1000 genomes]
rs4965496	1.00[EUR][1000 genomes]
rs58486555	1.00[EUR][1000 genomes]
rs59502554	1.00[EUR][1000 genomes]
rs59563158	1.00[EUR][1000 genomes]
rs59993988	1.00[EUR][1000 genomes]
rs7175111	1.00[CEU][hapmap]
rs73474858	1.00[EUR][1000 genomes]
rs74033718	1.00[EUR][1000 genomes]
rs74033725	1.00[EUR][1000 genomes]
rs74035728	1.00[EUR][1000 genomes]
rs74035771	1.00[EUR][1000 genomes]
rs748568	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs8032302	1.00[CEU][hapmap]
rs8032423	1.00[EUR][1000 genomes]
rs8039892	1.00[CEU][hapmap]
rs8042600	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915926	chr15:99519820-100138705	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv817289	chr15:99621061-100138705	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv431411	chr15:99621061-100143999	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv904546	chr15:99696046-100166300	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
5	nsv1036346	chr15:99752391-100365458	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
6	nsv542520	chr15:99752391-100365458	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
7	nsv1051560	chr15:99837102-100124483	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
8	nsv817201	chr15:99839238-100537341	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
9	nsv904558	chr15:100019382-100171684	ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:100035800-100054400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:100038400-100053200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr15:100039600-100052000	Enhancers	Primary B cells from peripheral blood	blood
4	chr15:100042200-100052000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr15:100045600-100051800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr15:100047400-100053000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
7	chr15:100047400-100053200	Enhancers	Primary hematopoietic stem cells	blood
8	chr15:100047400-100053400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr15:100048000-100053200	Enhancers	Primary T cells from cord blood	blood
10	chr15:100048200-100051400	Weak transcription	Fetal Intestine Small	intestine
11	chr15:100048200-100051600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr15:100048200-100052000	Weak transcription	Aorta	Aorta
13	chr15:100048200-100052200	Weak transcription	Colonic Mucosa	Colon
14	chr15:100048600-100051800	Weak transcription	Brain Cingulate Gyrus	brain
15	chr15:100048600-100051800	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr15:100048600-100052000	Weak transcription	Duodenum Mucosa	Duodenum
17	chr15:100048600-100052000	Weak transcription	Pancreas	Pancrea
18	chr15:100048600-100052000	Weak transcription	NH-A	brain
19	chr15:100048600-100052200	Weak transcription	Small Intestine	intestine
20	chr15:100048800-100051600	Weak transcription	HSMMtube	muscle
21	chr15:100048800-100052200	Weak transcription	Gastric	stomach
22	chr15:100048800-100052200	Weak transcription	Rectal Smooth Muscle	rectum
23	chr15:100049000-100051200	Weak transcription	Osteobl	bone
24	chr15:100049000-100051600	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr15:100049000-100051800	Weak transcription	Fetal Stomach	stomach
26	chr15:100049000-100051800	Weak transcription	Ovary	ovary
27	chr15:100049000-100051800	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr15:100049000-100051800	Weak transcription	NHLF	lung
29	chr15:100049000-100054800	Enhancers	Dnd41	blood
30	chr15:100049200-100051400	Weak transcription	HSMM	muscle
31	chr15:100049200-100051400	Weak transcription	NHDF-Ad	bronchial
32	chr15:100049200-100051600	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr15:100049200-100051600	Weak transcription	HUVEC	blood vessel
34	chr15:100049200-100051800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr15:100049200-100051800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr15:100049200-100052200	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr15:100049200-100052800	Flanking Active TSS	Primary B cells from cord blood	blood
38	chr15:100049400-100051600	Weak transcription	Right Atrium	heart
39	chr15:100049400-100052000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr15:100049400-100052200	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr15:100049800-100052000	Weak transcription	Psoas Muscle	Psoas
42	chr15:100049800-100053400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr15:100050000-100052000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr15:100050200-100051600	Enhancers	Fetal Lung	lung
45	chr15:100050200-100051800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr15:100050200-100052000	Weak transcription	Placenta	Placenta
47	chr15:100050200-100052000	Weak transcription	Lung	lung
48	chr15:100050200-100053000	Flanking Active TSS	GM12878-XiMat	blood
49	chr15:100050600-100052000	Weak transcription	Right Ventricle	heart
50	chr15:100050800-100052000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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