Variant report

Variant	rs2570926
Chromosome Location	chr15:100107832-100107833
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:100104091..100109623-chr15:100241901..100248412,10	MCF-7	breast:
2	chr15:100107133..100109166-chr15:100272746..100274556,2	MCF-7	breast:
3	chr15:99900193..99901836-chr15:100106225..100109193,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000183060	Chromatin interaction
ENSG00000168904	Chromatin interaction
ENSG00000068305	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1036320	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1108205	1.00[EUR][1000 genomes]
rs11247122	1.00[EUR][1000 genomes]
rs2570800	1.00[EUR][1000 genomes]
rs2570802	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2570803	1.00[EUR][1000 genomes]
rs2570809	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2570814	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2570820	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2570824	1.00[EUR][1000 genomes]
rs2570924	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2570925	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2570931	1.00[EUR][1000 genomes]
rs2570932	1.00[EUR][1000 genomes]
rs2570933	1.00[EUR][1000 genomes]
rs2570935	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2570938	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2581463	1.00[EUR][1000 genomes]
rs2581473	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28661496	1.00[EUR][1000 genomes]
rs28747079	1.00[EUR][1000 genomes]
rs28816423	1.00[EUR][1000 genomes]
rs325385	1.00[EUR][1000 genomes]
rs325388	1.00[EUR][1000 genomes]
rs325399	1.00[EUR][1000 genomes]
rs325401	1.00[EUR][1000 genomes]
rs325407	1.00[EUR][1000 genomes]
rs7163764	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7170276	1.00[EUR][1000 genomes]
rs7182926	1.00[EUR][1000 genomes]
rs8027544	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8040915	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915926	chr15:99519820-100138705	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv817289	chr15:99621061-100138705	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv431411	chr15:99621061-100143999	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv904546	chr15:99696046-100166300	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
5	nsv1036346	chr15:99752391-100365458	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
6	nsv542520	chr15:99752391-100365458	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
7	nsv1051560	chr15:99837102-100124483	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
8	nsv817201	chr15:99839238-100537341	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
9	nsv904558	chr15:100019382-100171684	ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
10	esv3438354	chr15:100105454-100108002	Flanking Active TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:100105000-100108200	Active TSS	HUES6 Cell Line	embryonic stem cell
2	chr15:100105000-100108400	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr15:100105000-100108800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr15:100105200-100108000	Active TSS	Duodenum Smooth Muscle	Duodenum
5	chr15:100105200-100108000	Active TSS	HSMM	muscle
6	chr15:100105200-100108200	Active TSS	H1 Cell Line	embryonic stem cell
7	chr15:100105200-100108200	Active TSS	iPS-15b Cell Line	embryonic stem cell
8	chr15:100105200-100108200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr15:100105200-100108200	Active TSS	HSMMtube	muscle
10	chr15:100105200-100108400	Active TSS	Breast Myoepithelial Primary Cells	Breast
11	chr15:100105200-100109400	Active TSS	Right Atrium	heart
12	chr15:100105400-100108000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr15:100105400-100108000	Active TSS	Fetal Adrenal Gland	Adrenal Gland
14	chr15:100105400-100108000	Active TSS	Fetal Intestine Small	intestine
15	chr15:100105400-100108000	Active TSS	Left Ventricle	heart
16	chr15:100105400-100108000	Active TSS	Sigmoid Colon	Sigmoid Colon
17	chr15:100105400-100108000	Active TSS	Skeletal Muscle Male	skeletal muscle
18	chr15:100105400-100108000	Active TSS	Thymus	Thymus
19	chr15:100105400-100108200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr15:100105400-100108200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr15:100105400-100108200	Active TSS	Brain Anterior Caudate	brain
22	chr15:100105400-100108200	Active TSS	Colon Smooth Muscle	Colon
23	chr15:100105400-100108200	Active TSS	Fetal Muscle Leg	muscle
24	chr15:100105400-100108200	Active TSS	Fetal Thymus	thymus
25	chr15:100105400-100108200	Active TSS	NHLF	lung
26	chr15:100105400-100108400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
27	chr15:100105400-100108400	Active TSS	Duodenum Mucosa	Duodenum
28	chr15:100105400-100108400	Active TSS	Psoas Muscle	Psoas
29	chr15:100105400-100108400	Active TSS	Skeletal Muscle Female	skeletal muscle
30	chr15:100105400-100108800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr15:100105400-100108800	Active TSS	Brain Inferior Temporal Lobe	brain
32	chr15:100105400-100109200	Active TSS	GM12878-XiMat	blood
33	chr15:100105400-100109600	Active TSS	Aorta	Aorta
34	chr15:100105400-100109600	Active TSS	Rectal Mucosa Donor 29	rectum
35	chr15:100105400-100109600	Active TSS	Right Ventricle	heart
36	chr15:100105600-100108200	Active TSS	Stomach Smooth Muscle	stomach
37	chr15:100105800-100108400	Active TSS	Fetal Heart	heart
38	chr15:100105800-100108600	Flanking Active TSS	Primary B cells from cord blood	blood
39	chr15:100105800-100108800	Active TSS	NHDF-Ad	bronchial
40	chr15:100106000-100108000	Active TSS	HMEC	breast
41	chr15:100106800-100108000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr15:100106800-100108400	Flanking Active TSS	Primary hematopoietic stem cells	blood
43	chr15:100106800-100108400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr15:100107000-100108000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr15:100107000-100108600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr15:100107200-100108000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
47	chr15:100107200-100108000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
48	chr15:100107200-100108200	Flanking Active TSS	Primary T cells from cord blood	blood
49	chr15:100107200-100108200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
50	chr15:100107200-100108200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum

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