Variant report

Variant	rs2581463
Chromosome Location	chr15:100137253-100137254
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1036320	1.00[EUR][1000 genomes]
rs1108205	1.00[EUR][1000 genomes]
rs11247122	1.00[EUR][1000 genomes]
rs2570800	1.00[EUR][1000 genomes]
rs2570802	1.00[EUR][1000 genomes]
rs2570803	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2570809	1.00[EUR][1000 genomes]
rs2570814	1.00[EUR][1000 genomes]
rs2570820	1.00[EUR][1000 genomes]
rs2570824	1.00[EUR][1000 genomes]
rs2570924	1.00[EUR][1000 genomes]
rs2570925	1.00[EUR][1000 genomes]
rs2570926	1.00[EUR][1000 genomes]
rs2570931	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2570932	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2570933	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2570935	1.00[EUR][1000 genomes]
rs2570938	1.00[EUR][1000 genomes]
rs2581473	1.00[EUR][1000 genomes]
rs28661496	1.00[EUR][1000 genomes]
rs28747079	1.00[EUR][1000 genomes]
rs28816423	1.00[EUR][1000 genomes]
rs325385	1.00[EUR][1000 genomes]
rs325388	1.00[EUR][1000 genomes]
rs325399	1.00[EUR][1000 genomes]
rs325401	1.00[EUR][1000 genomes]
rs325407	1.00[EUR][1000 genomes]
rs7163764	1.00[EUR][1000 genomes]
rs7170276	1.00[EUR][1000 genomes]
rs7182926	1.00[EUR][1000 genomes]
rs8027544	1.00[EUR][1000 genomes]
rs8040915	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915926	chr15:99519820-100138705	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv817289	chr15:99621061-100138705	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv431411	chr15:99621061-100143999	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv904546	chr15:99696046-100166300	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
5	nsv1036346	chr15:99752391-100365458	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
6	nsv542520	chr15:99752391-100365458	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
7	nsv817201	chr15:99839238-100537341	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
8	nsv904558	chr15:100019382-100171684	ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	esv1798883	chr15:100124483-100153969	Genic enhancers Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:100108000-100142000	Weak transcription	Thymus	Thymus
2	chr15:100109000-100140200	Weak transcription	Hela-S3	cervix
3	chr15:100115000-100138800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr15:100118800-100139800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr15:100120800-100140200	Weak transcription	HSMM	muscle
6	chr15:100120800-100142600	Weak transcription	Ovary	ovary
7	chr15:100124600-100142200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr15:100127000-100139200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr15:100128200-100142400	Weak transcription	Placenta	Placenta
10	chr15:100128800-100137400	Weak transcription	Fetal Thymus	thymus
11	chr15:100129400-100141800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr15:100129400-100142400	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr15:100129400-100155200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr15:100130000-100153000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr15:100131400-100142600	Weak transcription	Stomach Smooth Muscle	stomach
16	chr15:100131800-100140000	Weak transcription	Fetal Intestine Large	intestine
17	chr15:100132000-100140200	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr15:100132200-100139000	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr15:100132600-100137600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
20	chr15:100132600-100139600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr15:100132600-100154800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr15:100132800-100139800	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr15:100132800-100140200	Weak transcription	Duodenum Mucosa	Duodenum
24	chr15:100132800-100153200	Weak transcription	HepG2	liver
25	chr15:100133000-100138800	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr15:100133000-100140000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr15:100133000-100140200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr15:100133000-100140200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr15:100133000-100140200	Weak transcription	Osteobl	bone
30	chr15:100133000-100142200	Weak transcription	Fetal Stomach	stomach
31	chr15:100133000-100142200	Weak transcription	Spleen	Spleen
32	chr15:100133000-100142400	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr15:100133000-100142600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr15:100133000-100143600	Weak transcription	Brain Anterior Caudate	brain
35	chr15:100133000-100144400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr15:100133000-100145400	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr15:100133000-100145600	Weak transcription	NH-A	brain
38	chr15:100133000-100153400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr15:100133000-100155000	Weak transcription	Esophagus	oesophagus
40	chr15:100133000-100157000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr15:100133000-100159200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr15:100133000-100159200	Weak transcription	A549	lung
43	chr15:100133200-100139000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr15:100133200-100140200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr15:100133200-100140200	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr15:100133200-100142200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr15:100133200-100142400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr15:100133200-100144200	Weak transcription	HUVEC	blood vessel
49	chr15:100133200-100148000	Weak transcription	Stomach Mucosa	stomach
50	chr15:100133400-100139600	Weak transcription	Rectal Mucosa Donor 29	rectum

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