Variant report

Variant	rs325388
Chromosome Location	chr15:100237030-100237031
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1036320	1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1108205	1.00[EUR][1000 genomes]
rs11247122	1.00[EUR][1000 genomes]
rs2570800	1.00[EUR][1000 genomes]
rs2570802	1.00[EUR][1000 genomes]
rs2570803	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2570809	1.00[ASW][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2570814	0.86[YRI][hapmap];1.00[EUR][1000 genomes]
rs2570820	1.00[ASW][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];1.00[EUR][1000 genomes]
rs2570824	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2570924	1.00[EUR][1000 genomes]
rs2570925	1.00[EUR][1000 genomes]
rs2570926	1.00[EUR][1000 genomes]
rs2570931	1.00[EUR][1000 genomes]
rs2570932	1.00[EUR][1000 genomes]
rs2570933	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2570935	1.00[EUR][1000 genomes]
rs2570938	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2581463	1.00[EUR][1000 genomes]
rs2581473	1.00[ASW][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28661496	1.00[EUR][1000 genomes]
rs28747079	1.00[EUR][1000 genomes]
rs28816423	1.00[EUR][1000 genomes]
rs325385	1.00[EUR][1000 genomes]
rs325399	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs325401	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs325407	1.00[EUR][1000 genomes]
rs7163764	1.00[ASW][hapmap];0.83[LWK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];1.00[EUR][1000 genomes]
rs7170276	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7182926	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs8027544	1.00[EUR][1000 genomes]
rs8029296	1.00[YRI][hapmap]
rs8034889	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs8040915	1.00[ASW][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036346	chr15:99752391-100365458	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv542520	chr15:99752391-100365458	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv817201	chr15:99839238-100537341	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv1038005	chr15:100170414-100633714	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	nsv542522	chr15:100170414-100633714	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
6	nsv904559	chr15:100174907-100255046	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	nsv904560	chr15:100196657-100339331	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
8	nsv904561	chr15:100204918-100486828	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
9	nsv904562	chr15:100214935-100237682	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv428313	chr15:100236203-100757039	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:100159000-100253000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:100171200-100248800	Weak transcription	Gastric	stomach
3	chr15:100212800-100240000	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr15:100213200-100250800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr15:100213600-100243400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr15:100219400-100248200	Weak transcription	Small Intestine	intestine
7	chr15:100219600-100248400	Weak transcription	Spleen	Spleen
8	chr15:100219800-100243600	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr15:100222800-100243600	Weak transcription	Brain Angular Gyrus	brain
10	chr15:100223600-100247400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr15:100223800-100241000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr15:100223800-100243600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr15:100223800-100246800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr15:100224000-100246600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr15:100226800-100240000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr15:100227000-100237200	Strong transcription	Primary B cells from cord blood	blood
17	chr15:100227000-100237600	Strong transcription	Primary B cells from peripheral blood	blood
18	chr15:100227400-100238200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr15:100227400-100238400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr15:100227600-100238600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr15:100227800-100238200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr15:100227800-100243600	Weak transcription	HepG2	liver
23	chr15:100228400-100238600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr15:100228800-100238200	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr15:100229000-100237600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr15:100229600-100237600	Strong transcription	Primary neutrophils fromperipheralblood	blood
27	chr15:100230200-100237200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr15:100230400-100237400	Strong transcription	Osteobl	bone
29	chr15:100230600-100237200	Strong transcription	Primary hematopoietic stem cells	blood
30	chr15:100230600-100237800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr15:100231000-100250600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr15:100231400-100244200	Weak transcription	Stomach Mucosa	stomach
33	chr15:100233200-100243200	Weak transcription	Brain Hippocampus Middle	brain
34	chr15:100233200-100243200	Weak transcription	A549	lung
35	chr15:100233200-100243200	Weak transcription	NHLF	lung
36	chr15:100233200-100246800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr15:100233400-100240600	Weak transcription	Brain Substantia Nigra	brain
38	chr15:100233400-100240600	Weak transcription	Right Atrium	heart
39	chr15:100233400-100243400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr15:100233400-100243600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr15:100233400-100244200	Weak transcription	Aorta	Aorta
42	chr15:100233400-100244200	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr15:100233400-100244400	Weak transcription	Thymus	Thymus
44	chr15:100233400-100247000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr15:100233400-100247000	Weak transcription	Fetal Stomach	stomach
46	chr15:100233400-100247000	Weak transcription	Left Ventricle	heart
47	chr15:100233400-100247200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr15:100233400-100247400	Weak transcription	Psoas Muscle	Psoas
49	chr15:100233400-100247600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr15:100233400-100248400	Weak transcription	Right Ventricle	heart

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