Variant report

Variant	rs2570925
Chromosome Location	chr15:100109959-100109960
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:100108232..100110845-chr15:100132819..100134406,2	K562	blood:
2	chr15:100104323..100106476-chr15:100107864..100110052,2	K562	blood:
3	chr15:100108428..100111267-chr15:100125449..100127723,2	K562	blood:
4	chr15:100108357..100110961-chr15:100129554..100131532,2	MCF-7	breast:
5	chr15:100108921..100110854-chr15:100115057..100116660,2	K562	blood:

Variant related genes	Relation type
ENSG00000068305	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1036320	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1108205	1.00[EUR][1000 genomes]
rs11247122	1.00[EUR][1000 genomes]
rs2570800	1.00[EUR][1000 genomes]
rs2570802	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2570803	1.00[EUR][1000 genomes]
rs2570809	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2570814	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2570820	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2570824	1.00[EUR][1000 genomes]
rs2570924	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2570926	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2570931	1.00[EUR][1000 genomes]
rs2570932	1.00[EUR][1000 genomes]
rs2570933	1.00[EUR][1000 genomes]
rs2570935	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2570938	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2581463	1.00[EUR][1000 genomes]
rs2581473	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28661496	1.00[EUR][1000 genomes]
rs28747079	1.00[EUR][1000 genomes]
rs28816423	1.00[EUR][1000 genomes]
rs325385	1.00[EUR][1000 genomes]
rs325388	1.00[EUR][1000 genomes]
rs325399	1.00[EUR][1000 genomes]
rs325401	1.00[EUR][1000 genomes]
rs325407	1.00[EUR][1000 genomes]
rs7163764	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7170276	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7182926	1.00[EUR][1000 genomes]
rs8027544	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8040915	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915926	chr15:99519820-100138705	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv817289	chr15:99621061-100138705	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv431411	chr15:99621061-100143999	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv904546	chr15:99696046-100166300	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
5	nsv1036346	chr15:99752391-100365458	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
6	nsv542520	chr15:99752391-100365458	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
7	nsv1051560	chr15:99837102-100124483	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
8	nsv817201	chr15:99839238-100537341	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
9	nsv904558	chr15:100019382-100171684	ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:100107200-100114600	Weak transcription	Spleen	Spleen
2	chr15:100107400-100112400	Weak transcription	Gastric	stomach
3	chr15:100107400-100113600	Weak transcription	Small Intestine	intestine
4	chr15:100107400-100114800	Weak transcription	Esophagus	oesophagus
5	chr15:100107400-100120200	Weak transcription	Lung	lung
6	chr15:100107400-100134200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr15:100107400-100134200	Weak transcription	Pancreas	Pancrea
8	chr15:100107800-100111000	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr15:100107800-100112200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr15:100107800-100114800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr15:100107800-100116400	Weak transcription	Fetal Muscle Trunk	muscle
12	chr15:100107800-100118600	Weak transcription	Ovary	ovary
13	chr15:100107800-100124800	Weak transcription	Fetal Stomach	stomach
14	chr15:100108000-100117600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr15:100108000-100142000	Weak transcription	Thymus	Thymus
16	chr15:100108200-100111800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr15:100108200-100113800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr15:100108200-100114800	Weak transcription	Fetal Intestine Small	intestine
19	chr15:100108200-100120200	Weak transcription	Fetal Thymus	thymus
20	chr15:100108200-100125200	Weak transcription	Fetal Muscle Leg	muscle
21	chr15:100108400-100124600	Weak transcription	Brain Germinal Matrix	brain
22	chr15:100108600-100112000	Weak transcription	Brain Cingulate Gyrus	brain
23	chr15:100108800-100110000	Enhancers	Liver	Liver
24	chr15:100108800-100115000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr15:100109000-100110000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr15:100109000-100110400	Weak transcription	Rectal Smooth Muscle	rectum
27	chr15:100109000-100112400	Weak transcription	Fetal Lung	lung
28	chr15:100109000-100113600	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr15:100109000-100116200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr15:100109000-100124000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr15:100109000-100140200	Weak transcription	Hela-S3	cervix
32	chr15:100109200-100117600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr15:100109400-100111800	Weak transcription	Brain Hippocampus Middle	brain
34	chr15:100109400-100111800	Weak transcription	Colon Smooth Muscle	Colon
35	chr15:100109400-100112400	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr15:100109400-100113600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr15:100109400-100113800	Weak transcription	A549	lung
38	chr15:100109400-100114600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr15:100109600-100110000	Enhancers	HUES48 Cell Line	embryonic stem cell
40	chr15:100109600-100110000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr15:100109600-100110000	Enhancers	Fetal Heart	heart
42	chr15:100109600-100110600	Active TSS	GM12878-XiMat	blood
43	chr15:100109600-100110800	Weak transcription	Left Ventricle	heart
44	chr15:100109600-100110800	Weak transcription	Psoas Muscle	Psoas
45	chr15:100109600-100111600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr15:100109600-100111600	Weak transcription	Primary B cells from peripheral blood	blood
47	chr15:100109600-100111600	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr15:100109600-100111800	Weak transcription	Brain Substantia Nigra	brain
49	chr15:100109600-100112000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr15:100109600-100112000	Weak transcription	Adipose Nuclei	Adipose

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