Variant report

Variant	rs2570814
Chromosome Location	chr15:100155617-100155618
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:100148518..100150039-chr15:100155372..100157267,2	MCF-7	breast:
2	chr15:100151549..100153058-chr15:100155251..100157136,2	MCF-7	breast:
3	chr15:99948631..99950805-chr15:100153730..100155690,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1036320	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1108205	1.00[EUR][1000 genomes]
rs11247122	1.00[EUR][1000 genomes]
rs2570800	1.00[EUR][1000 genomes]
rs2570802	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2570803	1.00[EUR][1000 genomes]
rs2570809	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2570820	0.92[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2570824	1.00[EUR][1000 genomes]
rs2570924	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2570925	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2570926	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2570931	1.00[EUR][1000 genomes]
rs2570932	1.00[EUR][1000 genomes]
rs2570933	1.00[EUR][1000 genomes]
rs2570935	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2570938	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2581463	1.00[EUR][1000 genomes]
rs2581473	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28661496	1.00[EUR][1000 genomes]
rs28747079	1.00[EUR][1000 genomes]
rs28816423	1.00[EUR][1000 genomes]
rs325385	1.00[EUR][1000 genomes]
rs325388	0.86[YRI][hapmap];1.00[EUR][1000 genomes]
rs325399	1.00[EUR][1000 genomes]
rs325401	1.00[EUR][1000 genomes]
rs325407	1.00[EUR][1000 genomes]
rs7163764	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7170276	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7182926	1.00[EUR][1000 genomes]
rs8027544	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8029296	0.82[YRI][hapmap]
rs8034889	0.86[YRI][hapmap]
rs8040915	1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904546	chr15:99696046-100166300	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv1036346	chr15:99752391-100365458	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv542520	chr15:99752391-100365458	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv817201	chr15:99839238-100537341	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	nsv904558	chr15:100019382-100171684	ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:100133000-100157000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr15:100133000-100159200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr15:100133000-100159200	Weak transcription	A549	lung
4	chr15:100141000-100156600	Weak transcription	Brain Angular Gyrus	brain
5	chr15:100141000-100156800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr15:100141000-100157200	Weak transcription	Fetal Kidney	kidney
7	chr15:100142600-100159200	Weak transcription	Gastric	stomach
8	chr15:100142800-100157000	Weak transcription	Spleen	Spleen
9	chr15:100142800-100159200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr15:100142800-100159400	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr15:100142800-100164000	Weak transcription	Fetal Thymus	thymus
12	chr15:100142800-100176400	Weak transcription	Fetal Stomach	stomach
13	chr15:100143000-100163200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr15:100143800-100159200	Weak transcription	Lung	lung
15	chr15:100144000-100159200	Weak transcription	Fetal Muscle Leg	muscle
16	chr15:100144000-100180800	Weak transcription	Thymus	Thymus
17	chr15:100145600-100159200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr15:100146200-100159200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr15:100148600-100159200	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr15:100150800-100159200	Weak transcription	HSMM	muscle
21	chr15:100151200-100156000	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr15:100153000-100156000	Enhancers	Duodenum Mucosa	Duodenum
23	chr15:100153000-100158600	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr15:100153200-100156000	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr15:100153200-100157000	Enhancers	GM12878-XiMat	blood
26	chr15:100153200-100160400	Enhancers	Liver	Liver
27	chr15:100153400-100156000	Enhancers	Fetal Intestine Small	intestine
28	chr15:100153400-100156000	Enhancers	Rectal Mucosa Donor 31	rectum
29	chr15:100153400-100156200	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr15:100153400-100156200	Enhancers	Fetal Intestine Large	intestine
31	chr15:100153400-100159000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr15:100153400-100159400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr15:100153600-100155800	Enhancers	Fetal Lung	lung
34	chr15:100153600-100156000	Enhancers	Colon Smooth Muscle	Colon
35	chr15:100153600-100156000	Enhancers	Psoas Muscle	Psoas
36	chr15:100153600-100156000	Enhancers	Right Atrium	heart
37	chr15:100153800-100156000	Enhancers	Left Ventricle	heart
38	chr15:100153800-100156000	Enhancers	Sigmoid Colon	Sigmoid Colon
39	chr15:100153800-100156200	Enhancers	Primary hematopoietic stem cells short term culture	blood
40	chr15:100153800-100156200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
41	chr15:100154000-100156000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr15:100154000-100157200	Weak transcription	Brain Anterior Caudate	brain
43	chr15:100154000-100158200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
44	chr15:100154000-100159600	Weak transcription	Stomach Smooth Muscle	stomach
45	chr15:100154200-100156000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
46	chr15:100154200-100157000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr15:100154400-100156000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
48	chr15:100154400-100156000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
49	chr15:100154600-100156000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr15:100154800-100158000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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