Variant report

Variant	rs28839778
Chromosome Location	chr8:130445631-130445632
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10087235	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10087734	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10090670	1.00[ASN][1000 genomes]
rs10094748	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10104020	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10108893	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10109055	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10112452	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10956474	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10956476	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11506138	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11990493	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11997641	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12335056	0.95[ASN][1000 genomes]
rs28463195	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28599610	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28840106	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72712576	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72712593	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72714212	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72714222	0.95[ASN][1000 genomes]
rs72714223	0.95[ASN][1000 genomes]
rs72714224	0.95[ASN][1000 genomes]
rs9297787	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9297788	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9643250	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9656976	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429942	chr8:130397818-130460011	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv6394	chr8:130421502-130446035	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130427000-130449000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:130443400-130446400	Enhancers	Dnd41	blood
3	chr8:130444800-130447400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:130445400-130447800	Weak transcription	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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