Variant report

Variant	rs9297787
Chromosome Location	chr8:130405281-130405282
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:130402395..130404697-chr8:130404709..130406237,2	K562	blood:
2	chr8:130402395..130404004-chr8:130404709..130406465,2	K562	blood:
3	chr3:98237384..98238009-chr8:130405189..130406045,2	MCF-7	breast:
4	chr8:130403263..130407136-chr8:130409731..130411798,3	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10087235	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10087734	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10090670	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10094748	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10104020	0.88[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10108893	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10109055	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10112452	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10956474	0.88[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10956476	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11506138	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11990493	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11997641	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12164231	1.00[JPT][hapmap]
rs12234967	0.83[CHD][hapmap];1.00[JPT][hapmap]
rs12335056	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs16904080	1.00[JPT][hapmap]
rs17262815	1.00[JPT][hapmap]
rs1897449	1.00[JPT][hapmap]
rs28463195	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28599610	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28839778	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28840106	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72712576	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72712593	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72714212	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72714222	0.95[ASN][1000 genomes]
rs72714223	0.95[ASN][1000 genomes]
rs72714224	0.95[ASN][1000 genomes]
rs919702	1.00[JPT][hapmap]
rs9297788	0.88[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9643250	1.00[ASN][1000 genomes]
rs9656976	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429942	chr8:130397818-130460011	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130394800-130411800	Strong transcription	K562	blood
2	chr8:130401800-130405600	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr8:130401800-130405800	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr8:130402600-130406600	Weak transcription	Dnd41	blood

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