Variant report

Variant	rs2884227
Chromosome Location	chr2:173380819-173380820
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10183079	1.00[AMR][1000 genomes]
rs11885097	1.00[AMR][1000 genomes]
rs1920983	1.00[AMR][1000 genomes]
rs4246628	1.00[AMR][1000 genomes]
rs4972830	1.00[AMR][1000 genomes]
rs6433361	1.00[AMR][1000 genomes]
rs6732437	1.00[AMR][1000 genomes]
rs836586	1.00[AMR][1000 genomes]
rs836640	1.00[AMR][1000 genomes]
rs836641	1.00[AMR][1000 genomes]
rs836642	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173376400-173397400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:173377200-173386000	Weak transcription	Primary T cells from cord blood	blood
3	chr2:173378600-173383400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr2:173379600-173381200	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr2:173379800-173384200	Weak transcription	Primary B cells from cord blood	blood
6	chr2:173380600-173381000	Enhancers	Osteobl	bone
7	chr2:173380600-173381600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr2:173380600-173381600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr2:173380600-173381600	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr2:173380800-173381000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr2:173380800-173381200	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr2:173380800-173381200	Enhancers	K562	blood
13	chr2:173380800-173381600	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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