Variant report

Variant	rs836641
Chromosome Location	chr2:173538335-173538336
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:173534977..173536584-chr2:173536820..173539280,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2884227	1.00[AMR][1000 genomes]
rs6732437	1.00[AMR][1000 genomes]
rs836586	1.00[AMR][1000 genomes]
rs836640	1.00[AMR][1000 genomes]
rs836642	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	esv2760591	chr2:173396905-173719520	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv583665	chr2:173460640-173643087	Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173536400-173538400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr2:173536400-173538400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr2:173536400-173538400	Enhancers	HUVEC	blood vessel
4	chr2:173536400-173538600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr2:173536400-173538600	Enhancers	NHEK	skin
6	chr2:173536400-173538800	Enhancers	Muscle Satellite Cultured Cells	--
7	chr2:173536400-173539200	Enhancers	Fetal Intestine Large	intestine
8	chr2:173536400-173539600	Enhancers	Fetal Intestine Small	intestine
9	chr2:173536600-173538600	Enhancers	Osteobl	bone
10	chr2:173536800-173538800	Enhancers	HMEC	breast
11	chr2:173536800-173539000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr2:173536800-173539400	Enhancers	Duodenum Mucosa	Duodenum
13	chr2:173537400-173538600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr2:173537400-173542000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr2:173537600-173538400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr2:173537600-173538400	Enhancers	Sigmoid Colon	Sigmoid Colon
17	chr2:173537600-173538600	Enhancers	HepG2	liver
18	chr2:173537600-173539600	Enhancers	Fetal Muscle Leg	muscle
19	chr2:173537800-173538400	Flanking Active TSS	Hela-S3	cervix
20	chr2:173537800-173538600	Weak transcription	HSMMtube	muscle
21	chr2:173537800-173539600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr2:173538000-173539000	Enhancers	Placenta	Placenta
23	chr2:173538000-173539200	Weak transcription	Adipose Nuclei	Adipose
24	chr2:173538000-173539200	Weak transcription	Liver	Liver
25	chr2:173538200-173538600	Weak transcription	Fetal Heart	heart
26	chr2:173538200-173539000	Enhancers	A549	lung
27	chr2:173538200-173539200	Weak transcription	Stomach Mucosa	stomach
28	chr2:173538200-173539200	Weak transcription	NHLF	lung
29	chr2:173538200-173541800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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