Variant report

Variant	rs28842593
Chromosome Location	chr8:103044620-103044621
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10113700	0.95[ASN][1000 genomes]
rs11774180	0.95[ASN][1000 genomes]
rs11776754	0.95[ASN][1000 genomes]
rs11777589	0.91[ASN][1000 genomes]
rs16868908	0.95[ASN][1000 genomes]
rs2051248	0.95[ASN][1000 genomes]
rs2051249	0.95[ASN][1000 genomes]
rs56309425	0.95[ASN][1000 genomes]
rs6991144	0.81[ASN][1000 genomes]
rs7007251	0.95[ASN][1000 genomes]
rs7018404	0.95[ASN][1000 genomes]
rs73697427	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831411	chr8:102937991-103108140	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv891231	chr8:103001914-103076379	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv891232	chr8:103001914-103138045	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
4	nsv891233	chr8:103001914-103162638	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
5	nsv891234	chr8:103020391-103113701	Flanking Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv891235	chr8:103032394-103162638	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
7	nsv891236	chr8:103039917-103070301	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv891237	chr8:103039917-103113701	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103030600-103045000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr8:103036200-103046800	Weak transcription	Left Ventricle	heart
3	chr8:103036400-103046400	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr8:103037400-103046600	Weak transcription	Fetal Stomach	stomach
5	chr8:103039400-103047200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr8:103039400-103050400	Weak transcription	Right Ventricle	heart
7	chr8:103040200-103046400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr8:103042000-103046600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr8:103042000-103046800	Weak transcription	Psoas Muscle	Psoas
10	chr8:103042000-103046800	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr8:103042600-103046200	Weak transcription	Stomach Smooth Muscle	stomach
12	chr8:103042600-103046600	Weak transcription	Aorta	Aorta
13	chr8:103042600-103046600	Weak transcription	Ovary	ovary
14	chr8:103042800-103046200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr8:103044000-103045200	Enhancers	Fetal Muscle Leg	muscle
16	chr8:103044600-103046600	Weak transcription	Primary T cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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