Variant report

Variant	rs56309425
Chromosome Location	chr8:103049837-103049838
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:103049817..103051629-chr8:103058338..103060575,3	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10113700	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11774180	0.90[ASN][1000 genomes]
rs11776754	0.90[ASN][1000 genomes]
rs11777589	0.95[ASN][1000 genomes]
rs16868908	0.90[ASN][1000 genomes]
rs2051248	0.90[ASN][1000 genomes]
rs2051249	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28842593	0.95[ASN][1000 genomes]
rs7007251	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7018404	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73697427	0.80[ASN][1000 genomes]
rs7817714	0.85[AFR][1000 genomes]
rs7837378	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831411	chr8:102937991-103108140	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv891231	chr8:103001914-103076379	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv891232	chr8:103001914-103138045	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
4	nsv891233	chr8:103001914-103162638	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
5	nsv891234	chr8:103020391-103113701	Flanking Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv891235	chr8:103032394-103162638	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
7	nsv891236	chr8:103039917-103070301	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv891237	chr8:103039917-103113701	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103039400-103050400	Weak transcription	Right Ventricle	heart
2	chr8:103046200-103050200	Weak transcription	Fetal Brain Female	brain
3	chr8:103047000-103050000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr8:103047000-103050200	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr8:103047000-103050200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr8:103047000-103050200	Weak transcription	Psoas Muscle	Psoas
7	chr8:103047000-103051000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr8:103047200-103050000	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr8:103047200-103050200	Weak transcription	Aorta	Aorta
10	chr8:103047200-103050200	Weak transcription	Stomach Smooth Muscle	stomach
11	chr8:103047200-103050400	Weak transcription	Left Ventricle	heart
12	chr8:103047200-103050400	Weak transcription	Ovary	ovary
13	chr8:103047200-103054000	Weak transcription	Fetal Muscle Trunk	muscle
14	chr8:103047400-103050200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr8:103047800-103053800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr8:103048400-103050400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr8:103049400-103051200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr8:103049400-103051400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr8:103049600-103050000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr8:103049600-103050800	Enhancers	HSMM	muscle
21	chr8:103049600-103051200	Enhancers	NH-A	brain
22	chr8:103049600-103051200	Enhancers	Osteobl	bone
23	chr8:103049800-103050800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr8:103049800-103051000	Enhancers	Placenta	Placenta
25	chr8:103049800-103051200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr8:103049800-103051400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr8:103049800-103051400	Enhancers	Adipose Nuclei	Adipose
28	chr8:103049800-103051400	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr8:103049800-103051400	Enhancers	NHDF-Ad	bronchial

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