Variant report

Variant	rs2884771
Chromosome Location	chr4:150745265-150745266
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10018062	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10030601	0.96[EUR][1000 genomes]
rs10034879	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10428382	0.88[EUR][1000 genomes]
rs11936885	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.90[TSI][hapmap];0.89[YRI][hapmap]
rs17026528	0.80[EUR][1000 genomes]
rs2359703	0.96[EUR][1000 genomes]
rs28412389	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28597805	0.84[EUR][1000 genomes]
rs28627938	0.84[EUR][1000 genomes]
rs28633194	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28701528	0.86[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs6852150	1.00[GIH][hapmap];0.89[JPT][hapmap];0.88[EUR][1000 genomes]
rs7695783	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9307862	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1016169	chr4:150670127-150903827	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv537299	chr4:150670127-150903827	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv880254	chr4:150712923-150852782	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:150744000-150745800	Enhancers	HUVEC	blood vessel
2	chr4:150744400-150747000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr4:150744600-150745600	Enhancers	NHEK	skin
4	chr4:150744800-150745400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr4:150744800-150745400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
6	chr4:150744800-150745400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr4:150744800-150745400	Active TSS	HSMMtube	muscle
8	chr4:150744800-150745600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr4:150744800-150745800	Enhancers	Brain Germinal Matrix	brain
10	chr4:150744800-150745800	Enhancers	NHLF	lung
11	chr4:150745000-150745400	Flanking Active TSS	Osteobl	bone
12	chr4:150745000-150745800	Enhancers	Hela-S3	cervix
13	chr4:150745000-150747000	Enhancers	NHDF-Ad	bronchial
14	chr4:150745200-150745400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr4:150745200-150745400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr4:150745200-150745400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr4:150745200-150745600	Enhancers	HMEC	breast
18	chr4:150745200-150745800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr4:150745200-150746000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr4:150745200-150746000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr4:150745200-150746600	Enhancers	HSMM	muscle

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