Variant report

Variant	rs9307862
Chromosome Location	chr4:150823754-150823755
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10018062	0.84[EUR][1000 genomes]
rs10030601	0.81[EUR][1000 genomes]
rs10034879	0.84[EUR][1000 genomes]
rs10428382	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11936885	1.00[CEU][hapmap];0.94[JPT][hapmap]
rs17026528	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2359703	0.81[EUR][1000 genomes]
rs28412389	0.84[EUR][1000 genomes]
rs28450228	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28597805	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28627938	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28633194	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2884771	0.84[EUR][1000 genomes]
rs56676520	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6852150	0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72965338	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73857792	0.83[ASN][1000 genomes]
rs7695783	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1016169	chr4:150670127-150903827	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv537299	chr4:150670127-150903827	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv880254	chr4:150712923-150852782	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv880255	chr4:150777012-150874830	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:150822200-150823800	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr4:150823400-150823800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:150823400-150823800	Enhancers	Colonic Mucosa	Colon
4	chr4:150823600-150825600	Weak transcription	Rectal Mucosa Donor 29	rectum

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links