The 2.0 version of rSNPBase

Variant report

Variant rs28848532
Chromosome Location chr1:45440317-45440318
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:120 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:45389200-45450200 Weak transcription Primary T killer memory cells from peripheral blood blood
2 chr1:45392800-45443200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr1:45412800-45441000 Weak transcription HUES6 Cell Line embryonic stem cell
4 chr1:45413400-45441400 Weak transcription Brain Anterior Caudate brain
5 chr1:45413600-45441400 Weak transcription Colon Smooth Muscle Colon
6 chr1:45413600-45442800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
7 chr1:45413800-45441600 Weak transcription Rectal Mucosa Donor 31 rectum
8 chr1:45414000-45441000 Weak transcription Fetal Kidney kidney
9 chr1:45414000-45441600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
10 chr1:45414000-45443200 Weak transcription Pancreas Pancrea
11 chr1:45414000-45450800 Weak transcription Rectal Smooth Muscle rectum
12 chr1:45414000-45451000 Weak transcription Spleen Spleen
13 chr1:45414200-45443000 Weak transcription Gastric stomach
14 chr1:45415600-45440400 Weak transcription Fetal Brain Female brain
15 chr1:45416600-45443600 Weak transcription Psoas Muscle Psoas
16 chr1:45417600-45442000 Weak transcription Placenta Placenta
17 chr1:45421000-45450800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
18 chr1:45421400-45443400 Weak transcription Primary T helper naive cells from peripheral blood blood
19 chr1:45422000-45441400 Weak transcription Esophagus oesophagus
20 chr1:45423600-45441400 Weak transcription NHLF lung
21 chr1:45424200-45440800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
22 chr1:45424600-45441400 Weak transcription Lung lung
23 chr1:45424600-45443200 Weak transcription Thymus Thymus
24 chr1:45424800-45440600 Weak transcription Rectal Mucosa Donor 29 rectum
25 chr1:45424800-45445600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
26 chr1:45425000-45445600 Weak transcription Aorta Aorta
27 chr1:45425600-45443400 Weak transcription HSMMtube muscle
28 chr1:45429200-45440800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
29 chr1:45430600-45441600 Weak transcription HepG2 liver
30 chr1:45430800-45440800 Weak transcription NHEK skin
31 chr1:45430800-45450800 Weak transcription Brain Substantia Nigra brain
32 chr1:45432200-45443800 Weak transcription H9 Cell Line embryonic stem cell
33 chr1:45432400-45442200 Weak transcription Brain Germinal Matrix brain
34 chr1:45432600-45440800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
35 chr1:45432600-45440800 Weak transcription HUES64 Cell Line embryonic stem cell
36 chr1:45432600-45442000 Weak transcription Brain Cingulate Gyrus brain
37 chr1:45433200-45451000 Weak transcription Primary neutrophils fromperipheralblood blood
38 chr1:45433400-45443000 Weak transcription H1 Cell Line embryonic stem cell
39 chr1:45434400-45440400 Weak transcription Primary hematopoietic stem cells blood
40 chr1:45434400-45450800 Weak transcription Small Intestine intestine
41 chr1:45435600-45440800 Weak transcription iPS-20b Cell Line embryonic stem cell
42 chr1:45435600-45444200 Strong transcription Primary T cells from cord blood blood
43 chr1:45435600-45447400 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
44 chr1:45435600-45447600 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
45 chr1:45435800-45440400 Weak transcription HUES48 Cell Line embryonic stem cell
46 chr1:45436000-45447000 Strong transcription Fetal Muscle Leg muscle
47 chr1:45436200-45446800 Strong transcription Fetal Adrenal Gland Adrenal Gland
48 chr1:45436400-45440400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
49 chr1:45436400-45450800 Weak transcription HMEC breast
50 chr1:45436600-45440600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast

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Last update: Aug 31, 2015