Variant report

Variant	rs28856040
Chromosome Location	chr8:89081289-89081290
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10101680	0.89[EUR][1000 genomes]
rs12334980	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17646059	0.95[EUR][1000 genomes]
rs28516548	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029898	chr8:88837956-89606641	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv428520	chr8:88933423-89089323	Strong transcription Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	esv2758163	chr8:88963829-89133704	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	esv2759625	chr8:88963829-89133704	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv1030028	chr8:89060085-89733470	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:89051400-89101000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr8:89051800-89084600	Weak transcription	Fetal Stomach	stomach
3	chr8:89052400-89090400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr8:89058600-89088800	Weak transcription	NH-A	brain
5	chr8:89065600-89093000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr8:89065800-89089000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr8:89069800-89086800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr8:89069800-89100600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr8:89073600-89098200	Weak transcription	Fetal Brain Male	brain
10	chr8:89074000-89084400	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr8:89074000-89100600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr8:89074000-89100600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr8:89077400-89084800	Weak transcription	Aorta	Aorta
14	chr8:89078800-89088400	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr8:89079400-89101800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr8:89079600-89101400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr8:89081200-89081800	Strong transcription	Fetal Brain Female	brain
18	chr8:89081200-89082200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr8:89081200-89110400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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