Variant report

Variant	rs2885874
Chromosome Location	chr3:67341584-67341585
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1032319	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1387872	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1490253	0.81[ASN][1000 genomes]
rs1490255	0.81[ASN][1000 genomes]
rs1490256	0.81[ASN][1000 genomes]
rs1490262	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1490271	0.86[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs1586669	0.81[ASN][1000 genomes]
rs1586670	0.81[ASN][1000 genomes]
rs2054952	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2054953	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2054954	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2054955	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2054956	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2130543	0.81[ASN][1000 genomes]
rs2363664	0.81[ASN][1000 genomes]
rs2363707	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2363708	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4241437	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4856844	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62254719	0.89[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs62254723	0.87[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6548457	0.81[ASN][1000 genomes]
rs6548458	0.81[ASN][1000 genomes]
rs6548459	0.81[ASN][1000 genomes]
rs6548466	0.81[ASN][1000 genomes]
rs6548467	0.81[ASN][1000 genomes]
rs6548469	0.81[ASN][1000 genomes]
rs6795852	0.81[ASN][1000 genomes]
rs72914508	0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs902324	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs902326	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs969711	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9818912	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9838403	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs985345	0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9876253	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007093	chr3:67113534-67602973	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:67338800-67344000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr3:67339800-67342600	Enhancers	HSMMtube	muscle
3	chr3:67340200-67342600	Weak transcription	Brain Hippocampus Middle	brain
4	chr3:67340400-67341600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr3:67340400-67342800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr3:67340600-67341600	Enhancers	Primary B cells from peripheral blood	blood
7	chr3:67340600-67341600	Enhancers	Placenta	Placenta
8	chr3:67340800-67342200	Weak transcription	Stomach Mucosa	stomach
9	chr3:67340800-67347200	Enhancers	HepG2	liver
10	chr3:67341000-67342400	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr3:67341000-67342600	Weak transcription	Aorta	Aorta
12	chr3:67341200-67342200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr3:67341200-67342800	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr3:67341200-67342800	Enhancers	GM12878-XiMat	blood
15	chr3:67341400-67341600	Enhancers	Brain Cingulate Gyrus	brain

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