Variant report

Variant	rs4241437
Chromosome Location	chr3:67352237-67352238
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:67352144-67352242	MCF10A-Er-Src	breast:	n/a	n/a
2	POLR2A	chr3:67352229-67352294	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:67350252..67352954-chr3:67356993..67358698,2	K562	blood:

Variant related genes	Relation type
ENSG00000241884	TF binding region

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1032319	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1387866	0.81[ASN][1000 genomes]
rs1387872	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1490253	0.84[ASN][1000 genomes]
rs1490255	0.84[ASN][1000 genomes]
rs1490256	0.84[ASN][1000 genomes]
rs1490262	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1490271	0.87[ASW][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1552622	0.81[ASN][1000 genomes]
rs1552623	0.81[ASN][1000 genomes]
rs1586669	0.85[ASN][1000 genomes]
rs1586670	0.85[ASN][1000 genomes]
rs2054952	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2054953	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2054954	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2054955	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2054956	1.00[CEU][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.94[MKK][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2130543	0.85[ASN][1000 genomes]
rs2363664	0.85[ASN][1000 genomes]
rs2363707	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2363708	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2885874	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35131171	0.81[ASN][1000 genomes]
rs4856844	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62254719	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62254723	0.97[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs6548457	0.85[ASN][1000 genomes]
rs6548458	0.85[ASN][1000 genomes]
rs6548459	0.85[ASN][1000 genomes]
rs6548460	0.81[ASN][1000 genomes]
rs6548461	0.81[ASN][1000 genomes]
rs6548462	0.81[ASN][1000 genomes]
rs6548463	0.81[ASN][1000 genomes]
rs6548466	0.85[ASN][1000 genomes]
rs6548467	0.85[ASN][1000 genomes]
rs6548469	0.85[ASN][1000 genomes]
rs6793719	0.81[ASN][1000 genomes]
rs6795852	0.85[ASN][1000 genomes]
rs72914508	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs885111	0.81[ASN][1000 genomes]
rs902324	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs902326	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs951519	0.81[ASN][1000 genomes]
rs969711	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9818912	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.88[TSI][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9838403	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs985345	0.94[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs9876253	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007093	chr3:67113534-67602973	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:67346800-67355600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr3:67347200-67353000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:67347200-67355800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr3:67347600-67362600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr3:67350600-67355800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr3:67352000-67353600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:67352000-67353800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr3:67352000-67353800	Enhancers	HepG2	liver
9	chr3:67352200-67353000	Enhancers	Aorta	Aorta
10	chr3:67352200-67353400	Enhancers	Cortex derived primary cultured neurospheres	brain

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