Variant report

Variant	rs35131171
Chromosome Location	chr3:67400420-67400421
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1387866	0.93[ASN][1000 genomes]
rs1490253	0.95[ASN][1000 genomes]
rs1490255	0.97[ASN][1000 genomes]
rs1490256	0.97[ASN][1000 genomes]
rs1552622	0.94[ASN][1000 genomes]
rs1552623	0.94[ASN][1000 genomes]
rs1586669	0.96[ASN][1000 genomes]
rs1586670	0.96[ASN][1000 genomes]
rs1844554	0.83[ASN][1000 genomes]
rs2054952	0.81[ASN][1000 genomes]
rs2130543	0.96[ASN][1000 genomes]
rs2363664	0.96[ASN][1000 genomes]
rs2363707	0.81[ASN][1000 genomes]
rs2363708	0.81[ASN][1000 genomes]
rs4115374	0.89[ASN][1000 genomes]
rs4241437	0.81[ASN][1000 genomes]
rs62254719	0.81[ASN][1000 genomes]
rs6548457	0.96[ASN][1000 genomes]
rs6548458	0.96[ASN][1000 genomes]
rs6548459	0.96[ASN][1000 genomes]
rs6548460	0.93[ASN][1000 genomes]
rs6548461	0.93[ASN][1000 genomes]
rs6548462	0.93[ASN][1000 genomes]
rs6548463	0.93[ASN][1000 genomes]
rs6548466	0.96[ASN][1000 genomes]
rs6548467	0.96[ASN][1000 genomes]
rs6548469	0.96[ASN][1000 genomes]
rs6780117	0.88[ASN][1000 genomes]
rs6793719	0.93[ASN][1000 genomes]
rs6795852	0.96[ASN][1000 genomes]
rs72914508	0.81[ASN][1000 genomes]
rs885111	0.93[ASN][1000 genomes]
rs902324	0.81[ASN][1000 genomes]
rs902326	0.81[ASN][1000 genomes]
rs951519	0.94[ASN][1000 genomes]
rs969711	0.81[ASN][1000 genomes]
rs985345	0.81[ASN][1000 genomes]
rs9876253	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007093	chr3:67113534-67602973	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv470638	chr3:67367341-67814738	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv460700	chr3:67393629-67712970	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv590560	chr3:67393629-67712970	Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv834719	chr3:67396626-67589852	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:67399800-67400600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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