Variant report

Variant	rs28868142
Chromosome Location	chr18:40304867-40304868
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs2051335	0.81[AMR][1000 genomes]
rs2051336	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2051337	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2163385	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28369538	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28533998	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28536485	0.89[EUR][1000 genomes]
rs28595883	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28706225	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28788483	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28870469	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs636635	0.84[EUR][1000 genomes]
rs681130	0.84[EUR][1000 genomes]
rs714297	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7236977	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7240663	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73480786	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9947001	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9947998	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9954277	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9957941	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9960125	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9960642	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9961695	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9962201	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9964272	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9966233	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9966488	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9966845	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447158	chr18:40045478-40320720	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv833632	chr18:40187679-40388058	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1056794	chr18:40197837-40688514	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40296400-40309800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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