Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs2051335	0.86[AMR][1000 genomes]
rs2051336	0.86[AMR][1000 genomes]
rs2051337	0.86[AMR][1000 genomes]
rs2163385	0.86[AMR][1000 genomes]
rs28369538	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28533998	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28536485	0.84[EUR][1000 genomes]
rs28595883	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28706225	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28788483	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28868142	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs714297	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7236977	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7240663	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73480786	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9947001	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9947998	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9954277	0.84[EUR][1000 genomes]
rs9957941	0.86[AMR][1000 genomes]
rs9960125	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9960642	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9961695	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9962201	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9964272	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9966233	0.86[AMR][1000 genomes]
rs9966488	0.86[AMR][1000 genomes]
rs9966845	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833632	chr18:40187679-40388058	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1056794	chr18:40197837-40688514	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40310800-40322400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr18:40317800-40322400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr18:40318200-40322400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr18:40320400-40321400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr18:40320400-40321600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr18:40320400-40322400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr18:40320400-40322400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr18:40320600-40321800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr18:40320600-40322200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr18:40320600-40322600	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr18:40320800-40321800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
12	chr18:40320800-40323000	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr18:40321000-40321600	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
14	chr18:40321000-40322200	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr18:40321000-40322400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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